Variant report

Variant	rs17343504
Chromosome Location	chr4:95901481-95901482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11097447	1.00[ASW][hapmap]
rs1154847	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11939949	1.00[ASW][hapmap]
rs12508840	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13108149	1.00[ASW][hapmap]
rs13134042	1.00[YRI][hapmap]
rs13134763	1.00[YRI][hapmap]
rs1373647	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1596670	1.00[CHB][hapmap]
rs17022863	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17022883	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17022885	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17345417	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1822827	1.00[ASN][1000 genomes]
rs1836266	1.00[ASN][1000 genomes]
rs2120833	1.00[ASN][1000 genomes]
rs36024977	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4299590	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs4586955	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs58528248	1.00[ASN][1000 genomes]
rs61018424	1.00[ASN][1000 genomes]
rs6532522	1.00[ASN][1000 genomes]
rs6850046	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs71601251	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71601253	1.00[ASN][1000 genomes]
rs71601254	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71617619	1.00[ASN][1000 genomes]
rs7681859	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv997787	chr4:95859839-95934105	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv537190	chr4:95859839-95934105	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv966531	chr4:95901344-95906070	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95894200-95904800	Weak transcription	Aorta	Aorta
2	chr4:95900000-95901600	Enhancers	Fetal Brain Male	brain
3	chr4:95900000-95902000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:95901000-95901800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:95901000-95901800	Enhancers	Fetal Brain Female	brain
6	chr4:95901000-95902800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:95901400-95901800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:95901400-95902800	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links