Variant report

Variant	rs17022863
Chromosome Location	chr4:95939734-95939735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95936185..95937975-chr4:95939110..95940849,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1154847	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12508840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13128586	0.81[EUR][1000 genomes]
rs13129054	0.81[EUR][1000 genomes]
rs13134993	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1373647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1434546	0.80[EUR][1000 genomes]
rs1444926	0.81[EUR][1000 genomes]
rs1470409	0.82[EUR][1000 genomes]
rs1545326	0.81[EUR][1000 genomes]
rs1596670	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs17022883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17022885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17343504	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17345417	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1816461	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1822827	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1836266	1.00[ASN][1000 genomes]
rs2120833	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36024977	1.00[ASN][1000 genomes]
rs4145993	0.81[EUR][1000 genomes]
rs4299590	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331783	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4397000	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4586955	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58528248	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61018424	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532522	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840826	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6850046	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855395	0.82[EUR][1000 genomes]
rs71601251	1.00[ASN][1000 genomes]
rs71601253	1.00[ASN][1000 genomes]
rs71601254	1.00[ASN][1000 genomes]
rs71617619	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671545	0.86[AFR][1000 genomes]
rs7681859	0.90[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv879622	chr4:95917980-95984379	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95936000-95940000	Weak transcription	Aorta	Aorta
2	chr4:95938000-95940000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:95938000-95940200	Enhancers	Dnd41	blood
4	chr4:95938200-95941000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:95938400-95940600	Enhancers	Liver	Liver
6	chr4:95938600-95939800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:95938800-95939800	Weak transcription	Fetal Thymus	thymus
8	chr4:95938800-95940000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:95939200-95940000	Weak transcription	Thymus	Thymus
10	chr4:95939400-95940000	Flanking Active TSS	A549	lung
11	chr4:95939400-95940800	Enhancers	Fetal Kidney	kidney

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