Variant report

Variant	rs6855395
Chromosome Location	chr4:95917980-95917981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1023800	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs1023801	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs1023802	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs1023803	0.86[CHB][hapmap];0.96[CHD][hapmap];0.82[ASN][1000 genomes]
rs1023804	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs11097454	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1154847	0.83[ASW][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1160695	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12507710	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs12508840	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13113714	0.84[ASN][1000 genomes]
rs13128586	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13129054	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13129062	0.96[ASN][1000 genomes]
rs13145631	0.86[ASN][1000 genomes]
rs1318972	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs1347346	0.96[ASN][1000 genomes]
rs1373647	0.82[EUR][1000 genomes]
rs1434546	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1434548	0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1444920	0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1444921	0.96[ASN][1000 genomes]
rs1444923	0.82[ASN][1000 genomes]
rs1444926	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469336	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1470409	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530459	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs1545326	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1545327	0.86[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1545329	0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1560909	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17022863	0.82[EUR][1000 genomes]
rs17022885	0.89[TSI][hapmap]
rs1821451	0.92[ASN][1000 genomes]
rs1822826	0.92[ASN][1000 genomes]
rs1822827	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1834718	0.88[ASN][1000 genomes]
rs1838501	0.84[CHB][hapmap];0.92[ASN][1000 genomes]
rs1867542	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2028761	0.86[CHB][hapmap]
rs2044328	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs2099996	0.82[ASN][1000 genomes]
rs2120832	0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2865398	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3755874	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs3755875	0.86[CHB][hapmap]
rs3775033	0.85[CHB][hapmap]
rs3775034	0.88[ASN][1000 genomes]
rs4145993	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4299590	0.83[ASW][hapmap];0.81[LWK][hapmap];0.85[TSI][hapmap]
rs4331783	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4397000	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4426786	0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4450936	0.96[ASN][1000 genomes]
rs4586955	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4588466	0.96[ASN][1000 genomes]
rs4699825	0.82[ASN][1000 genomes]
rs4699826	0.82[ASN][1000 genomes]
rs4699827	0.96[ASN][1000 genomes]
rs4699828	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs58528248	0.82[EUR][1000 genomes]
rs61018424	0.82[EUR][1000 genomes]
rs6532520	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs6532523	0.88[ASN][1000 genomes]
rs6815448	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6816059	0.96[ASN][1000 genomes]
rs6820199	0.92[ASN][1000 genomes]
rs6836504	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6840826	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841746	0.96[ASN][1000 genomes]
rs6843668	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6844029	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6846665	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs6850046	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6853845	0.92[ASN][1000 genomes]
rs71617619	0.81[EUR][1000 genomes]
rs716190	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7665167	0.86[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs7681859	0.83[EUR][1000 genomes]
rs7698787	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs895105	0.87[ASN][1000 genomes]
rs920911	0.86[ASN][1000 genomes]
rs920912	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs965447	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs973887	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs996659	0.96[ASN][1000 genomes]
rs9995627	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv997787	chr4:95859839-95934105	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv537190	chr4:95859839-95934105	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv879622	chr4:95917980-95984379	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95916600-95918000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:95916600-95918000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:95916600-95918000	Enhancers	Fetal Brain Male	brain
4	chr4:95916600-95918600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:95916800-95918000	Active TSS	Brain Anterior Caudate	brain
6	chr4:95916800-95918400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:95916800-95918600	Active TSS	Psoas Muscle	Psoas
8	chr4:95917000-95918000	Active TSS	Fetal Muscle Trunk	muscle
9	chr4:95917000-95918200	Active TSS	Brain Cingulate Gyrus	brain
10	chr4:95917000-95918200	Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr4:95917000-95918600	Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr4:95917000-95918800	Active TSS	Fetal Muscle Leg	muscle
13	chr4:95917400-95918000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr4:95917400-95918000	Active TSS	Brain Angular Gyrus	brain
15	chr4:95917400-95918000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:95917600-95918000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:95917600-95918000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr4:95917600-95918000	Active TSS	Brain Hippocampus Middle	brain
19	chr4:95917600-95920600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:95917600-95922600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:95917800-95918000	Enhancers	Aorta	Aorta
22	chr4:95917800-95918000	Enhancers	Fetal Thymus	thymus
23	chr4:95917800-95918000	Flanking Active TSS	Thymus	Thymus
24	chr4:95917800-95918000	Flanking Active TSS	A549	lung
25	chr4:95917800-95918200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr4:95917800-95918400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:95917800-95918400	Enhancers	Fetal Brain Female	brain
28	chr4:95917800-95920800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:95917800-95920800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:95917800-95921000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:95917800-95921200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr4:95917800-95921800	Weak transcription	Fetal Kidney	kidney

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