Variant report

Variant	rs4397000
Chromosome Location	chr4:95922630-95922631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1023800	0.82[ASN][1000 genomes]
rs1023801	0.82[ASN][1000 genomes]
rs1023802	0.82[ASN][1000 genomes]
rs1023803	0.82[ASN][1000 genomes]
rs1023804	0.82[ASN][1000 genomes]
rs11097454	0.96[ASN][1000 genomes]
rs1154847	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1160695	0.92[ASN][1000 genomes]
rs12507710	0.86[ASN][1000 genomes]
rs12508840	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13113714	0.84[ASN][1000 genomes]
rs13128586	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13129054	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13129062	0.96[ASN][1000 genomes]
rs13145631	0.86[ASN][1000 genomes]
rs1318972	0.82[ASN][1000 genomes]
rs1347346	0.96[ASN][1000 genomes]
rs1373647	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1434546	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1434548	0.84[ASN][1000 genomes]
rs1444920	0.96[ASN][1000 genomes]
rs1444921	0.96[ASN][1000 genomes]
rs1444923	0.82[ASN][1000 genomes]
rs1444926	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469336	0.84[ASN][1000 genomes]
rs1470409	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530459	0.86[ASN][1000 genomes]
rs1545326	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1545327	0.92[ASN][1000 genomes]
rs1545329	0.96[ASN][1000 genomes]
rs1560909	0.88[ASN][1000 genomes]
rs17022863	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1821451	0.92[ASN][1000 genomes]
rs1822826	0.92[ASN][1000 genomes]
rs1822827	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1834718	0.88[ASN][1000 genomes]
rs1838501	0.92[ASN][1000 genomes]
rs1867542	0.96[ASN][1000 genomes]
rs2044328	0.90[ASN][1000 genomes]
rs2099996	0.82[ASN][1000 genomes]
rs2120832	0.96[ASN][1000 genomes]
rs2865398	0.84[ASN][1000 genomes]
rs3755874	0.86[ASN][1000 genomes]
rs3775034	0.88[ASN][1000 genomes]
rs4145993	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4299590	0.83[AMR][1000 genomes]
rs4331783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4426786	0.84[ASN][1000 genomes]
rs4450936	0.96[ASN][1000 genomes]
rs4586955	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4588466	0.96[ASN][1000 genomes]
rs4699825	0.82[ASN][1000 genomes]
rs4699826	0.82[ASN][1000 genomes]
rs4699827	0.96[ASN][1000 genomes]
rs4699828	0.96[ASN][1000 genomes]
rs58528248	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61018424	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6532520	0.86[ASN][1000 genomes]
rs6532523	0.88[ASN][1000 genomes]
rs6815448	0.96[ASN][1000 genomes]
rs6816059	0.96[ASN][1000 genomes]
rs6820199	0.92[ASN][1000 genomes]
rs6821072	0.83[AFR][1000 genomes]
rs6836504	0.96[ASN][1000 genomes]
rs6840826	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841746	0.96[ASN][1000 genomes]
rs6843668	0.96[ASN][1000 genomes]
rs6844029	0.92[ASN][1000 genomes]
rs6846665	0.80[ASN][1000 genomes]
rs6850046	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6853845	0.92[ASN][1000 genomes]
rs6855395	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71617619	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs716190	0.96[ASN][1000 genomes]
rs7665167	0.86[ASN][1000 genomes]
rs7681859	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7698787	0.96[ASN][1000 genomes]
rs895105	0.87[ASN][1000 genomes]
rs920911	0.86[ASN][1000 genomes]
rs920912	0.86[ASN][1000 genomes]
rs965447	0.92[ASN][1000 genomes]
rs973887	0.96[ASN][1000 genomes]
rs996659	0.96[ASN][1000 genomes]
rs9995627	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv997787	chr4:95859839-95934105	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv537190	chr4:95859839-95934105	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv879622	chr4:95917980-95984379	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95918000-95923400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:95918000-95926200	Weak transcription	Thymus	Thymus
3	chr4:95921800-95926000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:95922200-95925800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:95922600-95924400	Weak transcription	A549	lung

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