Variant report

Variant	rs13113714
Chromosome Location	chr4:95971995-95971996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11097454	0.80[ASN][1000 genomes]
rs1160695	0.84[ASN][1000 genomes]
rs13128586	0.81[ASN][1000 genomes]
rs13129054	0.81[ASN][1000 genomes]
rs13129062	0.80[ASN][1000 genomes]
rs1347346	0.80[ASN][1000 genomes]
rs1434546	0.88[ASN][1000 genomes]
rs1434548	0.92[ASN][1000 genomes]
rs1444920	0.80[ASN][1000 genomes]
rs1444921	0.80[ASN][1000 genomes]
rs1444926	0.84[ASN][1000 genomes]
rs1469336	0.92[ASN][1000 genomes]
rs1470409	0.84[ASN][1000 genomes]
rs1545326	0.81[ASN][1000 genomes]
rs1545329	0.80[ASN][1000 genomes]
rs1560909	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1821451	0.84[ASN][1000 genomes]
rs1834718	0.81[ASN][1000 genomes]
rs1867542	0.80[ASN][1000 genomes]
rs2120832	0.80[ASN][1000 genomes]
rs2865398	0.92[ASN][1000 genomes]
rs4145993	0.84[ASN][1000 genomes]
rs4331783	0.84[ASN][1000 genomes]
rs4397000	0.84[ASN][1000 genomes]
rs4426786	0.92[ASN][1000 genomes]
rs4450936	0.80[ASN][1000 genomes]
rs4588466	0.80[ASN][1000 genomes]
rs4699827	0.80[ASN][1000 genomes]
rs4699828	0.80[ASN][1000 genomes]
rs6815448	0.80[ASN][1000 genomes]
rs6816059	0.80[ASN][1000 genomes]
rs6836504	0.80[ASN][1000 genomes]
rs6840826	0.84[ASN][1000 genomes]
rs6841746	0.80[ASN][1000 genomes]
rs6843668	0.80[ASN][1000 genomes]
rs6844029	0.84[ASN][1000 genomes]
rs6853845	0.84[ASN][1000 genomes]
rs6855395	0.84[ASN][1000 genomes]
rs716190	0.80[ASN][1000 genomes]
rs7665167	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7698787	0.80[ASN][1000 genomes]
rs973887	0.80[ASN][1000 genomes]
rs996659	0.80[ASN][1000 genomes]
rs9995627	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv879622	chr4:95917980-95984379	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv830011	chr4:95947560-96103934	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95957000-95972400	Weak transcription	Psoas Muscle	Psoas
2	chr4:95966800-95972800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:95967000-95972200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:95967000-95972400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:95967000-95972400	Weak transcription	Brain Germinal Matrix	brain
6	chr4:95967000-95972400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:95967000-95972400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:95967000-95972400	Weak transcription	NH-A	brain
9	chr4:95967000-95972600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:95967000-95972800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:95967200-95982800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:95967400-95972400	Weak transcription	Ovary	ovary
13	chr4:95967800-95972200	Weak transcription	Brain Anterior Caudate	brain
14	chr4:95967800-95972400	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:95969200-95972200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:95969600-95972200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:95969600-95972600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:95970000-95972400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:95970200-95973000	Enhancers	Fetal Brain Male	brain
20	chr4:95971400-95972200	Enhancers	Fetal Brain Female	brain
21	chr4:95971400-95972200	Weak transcription	Fetal Kidney	kidney
22	chr4:95971400-95972400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:95971400-95973200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:95971600-95972200	Flanking Active TSS	A549	lung
25	chr4:95971800-95972400	Weak transcription	Aorta	Aorta
26	chr4:95971800-95972400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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