Variant report

Variant	rs1545326
Chromosome Location	chr4:95914424-95914425
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95912061..95914592-chr4:96007501..96009488,2	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1023800	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs1023801	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1023802	0.85[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1023803	0.86[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1023804	0.85[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs11097454	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1154847	0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs1160695	0.86[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs12507710	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs12508840	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13113714	0.81[ASN][1000 genomes]
rs13128586	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13129054	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13129062	0.92[ASN][1000 genomes]
rs13145631	0.90[ASN][1000 genomes]
rs1318972	0.82[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1347346	0.92[ASN][1000 genomes]
rs1373647	0.81[EUR][1000 genomes]
rs1434546	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1434548	0.86[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1444920	0.86[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1444921	0.92[ASN][1000 genomes]
rs1444923	0.86[ASN][1000 genomes]
rs1444926	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1469336	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1470409	0.92[CEU][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1530459	0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1545327	0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1545328	0.94[LWK][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs1545329	0.86[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1560909	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs17022863	0.81[EUR][1000 genomes]
rs17022885	0.86[TSI][hapmap]
rs1821451	0.88[ASN][1000 genomes]
rs1822826	0.96[ASN][1000 genomes]
rs1822827	0.81[EUR][1000 genomes]
rs1834718	0.85[ASN][1000 genomes]
rs1838501	0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1867542	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs2028761	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2044328	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs2099996	0.86[ASN][1000 genomes]
rs2120832	0.86[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs2865398	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs3755874	0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs3755875	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs3775033	0.85[CHB][hapmap]
rs3775034	0.84[ASN][1000 genomes]
rs3775041	0.89[AFR][1000 genomes]
rs4145993	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4299590	0.82[TSI][hapmap]
rs4331783	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4397000	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4426786	0.86[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs4450936	0.92[ASN][1000 genomes]
rs4586955	0.81[EUR][1000 genomes]
rs4588466	0.92[ASN][1000 genomes]
rs4699825	0.86[ASN][1000 genomes]
rs4699826	0.86[ASN][1000 genomes]
rs4699827	0.92[ASN][1000 genomes]
rs4699828	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs58528248	0.81[EUR][1000 genomes]
rs61018424	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6532520	0.85[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs6532522	0.82[AMR][1000 genomes]
rs6532523	0.85[ASN][1000 genomes]
rs6815448	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs6816059	0.92[ASN][1000 genomes]
rs6820199	0.88[ASN][1000 genomes]
rs6836504	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs6840826	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6841746	0.92[ASN][1000 genomes]
rs6843668	0.85[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs6844029	0.86[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs6846665	0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs6850046	0.81[EUR][1000 genomes]
rs6853845	0.88[ASN][1000 genomes]
rs6855395	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs716190	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs723169	0.89[AFR][1000 genomes]
rs723170	0.89[AFR][1000 genomes]
rs7665167	0.86[CHB][hapmap];0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs7681859	0.81[EUR][1000 genomes]
rs7698787	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs895105	0.83[ASN][1000 genomes]
rs920911	0.83[ASN][1000 genomes]
rs920912	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs965447	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs973887	0.85[CHB][hapmap];0.92[ASN][1000 genomes]
rs996659	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv997787	chr4:95859839-95934105	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv537190	chr4:95859839-95934105	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95908800-95915400	Weak transcription	A549	lung
2	chr4:95912600-95916000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:95912600-95916600	Weak transcription	Fetal Kidney	kidney
4	chr4:95913400-95916800	Weak transcription	Fetal Thymus	thymus

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