Variant report

Variant	rs11098114
Chromosome Location	chr4:79174139-79174140
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:32)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:32 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:79173955-79174393	H1-hESC	embryonic stem cell:	n/a	n/a
2	MYC	chr4:79174024-79174333	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr4:79173950-79174326	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr4:79173881-79174629	H1-hESC	embryonic stem cell:	n/a	n/a
5	TRIM28	chr4:79174081-79174439	K562	blood:	n/a	n/a
6	RXRA	chr4:79174042-79174273	H1-hESC	embryonic stem cell:	n/a	n/a
7	BCL11A	chr4:79173989-79174215	H1-hESC	embryonic stem cell:	n/a	n/a
8	CBX3	chr4:79174068-79174356	K562	blood:	n/a	n/a
9	EP300	chr4:79173986-79174283	H1-hESC	embryonic stem cell:	n/a	n/a
10	RAD21	chr4:79173992-79174356	H1-hESC	embryonic stem cell:	n/a	n/a
11	TCF12	chr4:79174046-79174327	H1-hESC	embryonic stem cell:	n/a	n/a
12	TEAD4	chr4:79173871-79174488	H1-hESC	embryonic stem cell:	n/a	n/a
13	HDAC2	chr4:79174005-79174212	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF2	chr4:79173724-79174369	H1-hESC	embryonic stem cell:	n/a	n/a
15	SP1	chr4:79173779-79174362	H1-hESC	embryonic stem cell:	n/a	n/a
16	SP1	chr4:79173840-79174431	H1-hESC	embryonic stem cell:	n/a	n/a
17	SETDB1	chr4:79174049-79174331	U2OS	brain:	n/a	n/a
18	USF1	chr4:79173868-79174393	H1-hESC	embryonic stem cell:	n/a	n/a
19	YY1	chr4:79173887-79174349	H1-hESC	embryonic stem cell:	n/a	n/a
20	EP300	chr4:79173834-79174397	H1-hESC	embryonic stem cell:	n/a	n/a
21	TCF12	chr4:79173928-79174327	H1-hESC	embryonic stem cell:	n/a	n/a
22	YY1	chr4:79174015-79174331	H1-hESC	embryonic stem cell:	n/a	n/a
23	NANOG	chr4:79173908-79174213	H1-hESC	embryonic stem cell:	n/a	n/a
24	TEAD4	chr4:79173927-79174521	H1-hESC	embryonic stem cell:	n/a	n/a
25	NANOG	chr4:79173929-79174224	H1-hESC	embryonic stem cell:	n/a	n/a
26	HDAC2	chr4:79173903-79174421	H1-hESC	embryonic stem cell:	n/a	n/a
27	KAP1	chr4:79174063-79174329	K562	blood:	n/a	n/a
28	MAX	chr4:79173889-79174288	H1-hESC	embryonic stem cell:	n/a	n/a
29	RAD21	chr4:79173966-79174436	H1-hESC	embryonic stem cell:	n/a	n/a
30	BCL11A	chr4:79173974-79174275	H1-hESC	embryonic stem cell:	n/a	n/a
31	ZNF143	chr4:79174035-79174411	H1-hESC	embryonic stem cell:	n/a	n/a
32	ATF2	chr4:79173871-79174374	H1-hESC	embryonic stem cell:	n/a	n/a

No data

Variant related genes	Relation type
FRAS1	TF binding region

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10028072	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1017646	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1017647	1.00[ASN][1000 genomes]
rs1017648	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1017650	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1017651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11098131	0.95[ASN][1000 genomes]
rs11941234	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13118323	1.00[ASN][1000 genomes]
rs1378237	1.00[ASN][1000 genomes]
rs1378238	1.00[ASN][1000 genomes]
rs1454894	1.00[ASN][1000 genomes]
rs1454895	0.95[ASN][1000 genomes]
rs1454900	1.00[ASN][1000 genomes]
rs1454901	1.00[ASN][1000 genomes]
rs1580105	1.00[ASN][1000 genomes]
rs17003069	0.95[ASN][1000 genomes]
rs17003070	0.95[ASN][1000 genomes]
rs17003071	0.95[ASN][1000 genomes]
rs17003092	1.00[ASN][1000 genomes]
rs17003108	1.00[ASN][1000 genomes]
rs1823921	0.95[ASN][1000 genomes]
rs1840390	1.00[ASN][1000 genomes]
rs1840393	1.00[ASN][1000 genomes]
rs1952400	1.00[ASN][1000 genomes]
rs1999053	1.00[ASN][1000 genomes]
rs2008587	1.00[ASN][1000 genomes]
rs2013764	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2013770	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2045169	1.00[ASN][1000 genomes]
rs2124145	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2225198	1.00[ASN][1000 genomes]
rs2867014	1.00[ASN][1000 genomes]
rs28803795	0.82[ASN][1000 genomes]
rs28806931	0.82[ASN][1000 genomes]
rs345503	1.00[ASN][1000 genomes]
rs345506	1.00[ASN][1000 genomes]
rs345528	0.82[ASN][1000 genomes]
rs4859919	1.00[ASN][1000 genomes]
rs4859921	1.00[ASN][1000 genomes]
rs4859922	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60544673	0.95[ASN][1000 genomes]
rs60608669	0.82[ASN][1000 genomes]
rs60862246	0.91[ASN][1000 genomes]
rs61283188	1.00[ASN][1000 genomes]
rs6533564	1.00[ASN][1000 genomes]
rs6814182	0.84[ASN][1000 genomes]
rs6820900	1.00[ASN][1000 genomes]
rs6822551	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6822773	0.95[ASN][1000 genomes]
rs6846166	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6847377	1.00[ASN][1000 genomes]
rs6850956	1.00[ASN][1000 genomes]
rs6855457	1.00[ASN][1000 genomes]
rs72862191	0.95[ASN][1000 genomes]
rs72862196	0.95[ASN][1000 genomes]
rs72864511	0.91[ASN][1000 genomes]
rs72864520	1.00[ASN][1000 genomes]
rs72864521	1.00[ASN][1000 genomes]
rs72864564	1.00[ASN][1000 genomes]
rs72864567	1.00[ASN][1000 genomes]
rs72864571	1.00[ASN][1000 genomes]
rs72864577	1.00[ASN][1000 genomes]
rs72864587	1.00[ASN][1000 genomes]
rs72866312	0.82[ASN][1000 genomes]
rs7438056	1.00[ASN][1000 genomes]
rs7667670	1.00[ASN][1000 genomes]
rs967635	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv829978	chr4:79144453-79291868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79144200-79176000	Weak transcription	Psoas Muscle	Psoas
2	chr4:79144600-79179000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:79167800-79176000	Weak transcription	Esophagus	oesophagus
4	chr4:79169200-79186200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:79169200-79187400	Weak transcription	HSMMtube	muscle
6	chr4:79169600-79187800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:79169800-79197400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:79169800-79213800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:79170400-79186000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:79170600-79176200	Weak transcription	Fetal Heart	heart
11	chr4:79170800-79176000	Weak transcription	Pancreas	Pancrea
12	chr4:79172400-79174200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr4:79172400-79175400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr4:79172400-79175800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:79172600-79175000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:79172600-79175000	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr4:79172600-79175200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:79172800-79174400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr4:79172800-79175400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr4:79173400-79174800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:79173400-79175200	Strong transcription	Fetal Intestine Large	intestine
22	chr4:79173600-79174200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:79173600-79177800	Strong transcription	HepG2	liver
24	chr4:79173800-79174200	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr4:79173800-79174600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:79173800-79174800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
27	chr4:79173800-79175200	Strong transcription	Fetal Kidney	kidney
28	chr4:79173800-79175400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
29	chr4:79173800-79186200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr4:79173800-79187000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:79173800-79187400	Weak transcription	Fetal Stomach	stomach
32	chr4:79174000-79174600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
33	chr4:79174000-79174600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:79174000-79174600	Strong transcription	Fetal Lung	lung
35	chr4:79174000-79175000	Strong transcription	Skeletal Muscle Female	skeletal muscle

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