Variant report

Variant	rs72862196
Chromosome Location	chr4:79163220-79163221
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr4:79163128-79163617	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
FRAS1	TF binding region

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10028072	0.95[ASN][1000 genomes]
rs1017646	0.95[ASN][1000 genomes]
rs1017647	0.95[ASN][1000 genomes]
rs1017648	0.95[ASN][1000 genomes]
rs1017650	0.95[ASN][1000 genomes]
rs1017651	0.95[ASN][1000 genomes]
rs10518198	1.00[EUR][1000 genomes]
rs11098114	0.95[ASN][1000 genomes]
rs11098131	0.91[ASN][1000 genomes]
rs11941234	1.00[ASN][1000 genomes]
rs13118323	0.95[ASN][1000 genomes]
rs1317476	1.00[EUR][1000 genomes]
rs1378237	0.95[ASN][1000 genomes]
rs1378238	0.95[ASN][1000 genomes]
rs1454894	0.95[ASN][1000 genomes]
rs1454895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1454900	0.95[ASN][1000 genomes]
rs1454901	0.95[ASN][1000 genomes]
rs1580105	0.95[ASN][1000 genomes]
rs17003069	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17003070	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17003071	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17003092	0.95[ASN][1000 genomes]
rs17003108	0.95[ASN][1000 genomes]
rs1823921	1.00[ASN][1000 genomes]
rs1840390	0.95[ASN][1000 genomes]
rs1840393	0.95[ASN][1000 genomes]
rs1952400	0.95[ASN][1000 genomes]
rs1999053	0.95[ASN][1000 genomes]
rs2008587	0.95[ASN][1000 genomes]
rs2013764	0.95[ASN][1000 genomes]
rs2013770	0.95[ASN][1000 genomes]
rs2045169	0.95[ASN][1000 genomes]
rs2124145	0.95[ASN][1000 genomes]
rs2225198	0.95[ASN][1000 genomes]
rs2867014	0.95[ASN][1000 genomes]
rs345503	0.95[ASN][1000 genomes]
rs345506	0.95[ASN][1000 genomes]
rs4859919	0.95[ASN][1000 genomes]
rs4859921	0.95[ASN][1000 genomes]
rs4859922	0.95[ASN][1000 genomes]
rs60544673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60862246	0.86[ASN][1000 genomes]
rs60995433	1.00[EUR][1000 genomes]
rs61283188	0.95[ASN][1000 genomes]
rs6533564	0.95[ASN][1000 genomes]
rs6814182	0.80[ASN][1000 genomes]
rs6820900	0.95[ASN][1000 genomes]
rs6822551	0.95[ASN][1000 genomes]
rs6822773	0.91[ASN][1000 genomes]
rs6846166	0.95[ASN][1000 genomes]
rs6847377	0.95[ASN][1000 genomes]
rs6850956	0.95[ASN][1000 genomes]
rs6855457	0.95[ASN][1000 genomes]
rs72862191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72864511	0.86[ASN][1000 genomes]
rs72864520	0.95[ASN][1000 genomes]
rs72864521	0.95[ASN][1000 genomes]
rs72864564	0.95[ASN][1000 genomes]
rs72864567	0.95[ASN][1000 genomes]
rs72864571	0.95[ASN][1000 genomes]
rs72864577	0.95[ASN][1000 genomes]
rs72864587	0.95[ASN][1000 genomes]
rs7438056	0.95[ASN][1000 genomes]
rs7667670	0.95[ASN][1000 genomes]
rs967635	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv999844	chr4:79092549-79165869	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv829978	chr4:79144453-79291868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79144200-79176000	Weak transcription	Psoas Muscle	Psoas
2	chr4:79144600-79179000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:79151600-79165200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:79151800-79165000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:79154400-79173600	Weak transcription	HepG2	liver
6	chr4:79158800-79165600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:79158800-79165800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:79160400-79168800	Weak transcription	Fetal Lung	lung
9	chr4:79161800-79165400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:79161800-79165400	Weak transcription	Fetal Intestine Large	intestine
11	chr4:79162600-79165600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:79162800-79163400	Enhancers	NHDF-Ad	bronchial
13	chr4:79162800-79163600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:79162800-79167400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:79163000-79163600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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