Variant report

Variant	rs11098428
Chromosome Location	chr4:119053391-119053392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 173 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:167)

rs_ID	r²[population]
rs10008049	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10014096	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10015232	1.00[ASN][1000 genomes]
rs10016285	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020473	0.91[ASN][1000 genomes]
rs10021128	0.91[ASN][1000 genomes]
rs10021781	1.00[ASN][1000 genomes]
rs10023699	1.00[ASN][1000 genomes]
rs10026541	0.96[ASN][1000 genomes]
rs10027013	0.87[ASN][1000 genomes]
rs10027893	0.91[ASN][1000 genomes]
rs10033308	0.96[ASN][1000 genomes]
rs10033412	0.98[ASN][1000 genomes]
rs1022287	0.92[JPT][hapmap]
rs1022288	0.92[JPT][hapmap]
rs10440400	1.00[ASN][1000 genomes]
rs11098422	0.91[ASN][1000 genomes]
rs11098424	0.95[ASN][1000 genomes]
rs11098425	0.95[ASN][1000 genomes]
rs11098427	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722962	0.91[ASN][1000 genomes]
rs11728724	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11730541	0.96[ASN][1000 genomes]
rs11733562	0.91[ASN][1000 genomes]
rs11736688	0.96[ASN][1000 genomes]
rs11937777	0.98[ASN][1000 genomes]
rs11947071	0.98[ASN][1000 genomes]
rs12499751	0.91[ASN][1000 genomes]
rs12505156	0.95[ASN][1000 genomes]
rs12508017	0.98[ASN][1000 genomes]
rs12711064	1.00[ASN][1000 genomes]
rs13104129	0.91[ASN][1000 genomes]
rs13111697	1.00[ASN][1000 genomes]
rs13114621	0.98[ASN][1000 genomes]
rs13114895	0.98[ASN][1000 genomes]
rs13125397	0.84[ASN][1000 genomes]
rs13126882	0.96[ASN][1000 genomes]
rs13127321	0.96[ASN][1000 genomes]
rs13134901	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13135646	0.89[ASN][1000 genomes]
rs13139875	0.91[ASN][1000 genomes]
rs1319938	0.98[ASN][1000 genomes]
rs1514659	0.93[JPT][hapmap]
rs1994384	0.91[ASN][1000 genomes]
rs2049362	0.95[ASN][1000 genomes]
rs2140475	0.93[ASN][1000 genomes]
rs2389510	0.83[CHB][hapmap];0.91[ASN][1000 genomes]
rs2389511	0.91[ASN][1000 genomes]
rs2389512	0.91[ASN][1000 genomes]
rs2389513	0.95[ASN][1000 genomes]
rs2389514	0.95[ASN][1000 genomes]
rs2389515	0.95[ASN][1000 genomes]
rs2389516	0.95[ASN][1000 genomes]
rs2389517	0.95[ASN][1000 genomes]
rs2389518	0.95[ASN][1000 genomes]
rs2389519	0.95[ASN][1000 genomes]
rs2389520	0.96[ASN][1000 genomes]
rs2389521	0.94[ASN][1000 genomes]
rs2389522	0.96[ASN][1000 genomes]
rs2389523	0.96[ASN][1000 genomes]
rs2389524	0.96[ASN][1000 genomes]
rs2389525	0.98[ASN][1000 genomes]
rs2389526	0.98[ASN][1000 genomes]
rs2389527	0.98[ASN][1000 genomes]
rs2892787	0.91[ASN][1000 genomes]
rs2892788	0.96[ASN][1000 genomes]
rs2892789	0.96[ASN][1000 genomes]
rs2892790	0.96[ASN][1000 genomes]
rs2892791	0.98[ASN][1000 genomes]
rs2892799	0.94[ASN][1000 genomes]
rs4131600	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4240316	0.98[ASN][1000 genomes]
rs4240317	0.98[ASN][1000 genomes]
rs4240318	0.98[ASN][1000 genomes]
rs4280816	0.98[ASN][1000 genomes]
rs4362895	0.83[ASN][1000 genomes]
rs4397073	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4437319	0.91[ASN][1000 genomes]
rs4452509	0.98[ASN][1000 genomes]
rs4546313	0.90[ASN][1000 genomes]
rs4558930	0.89[ASN][1000 genomes]
rs4566725	0.98[ASN][1000 genomes]
rs4569819	0.98[ASN][1000 genomes]
rs4576085	0.98[ASN][1000 genomes]
rs4616829	0.98[ASN][1000 genomes]
rs4833560	1.00[ASN][1000 genomes]
rs4833561	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4833563	1.00[ASN][1000 genomes]
rs4833566	0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4833567	0.90[ASN][1000 genomes]
rs4834656	0.91[ASN][1000 genomes]
rs4834657	0.98[ASN][1000 genomes]
rs4834658	0.85[ASN][1000 genomes]
rs4834660	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834661	1.00[ASN][1000 genomes]
rs4834664	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834665	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834666	0.96[ASN][1000 genomes]
rs581739	0.89[ASN][1000 genomes]
rs582448	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs586073	0.80[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs586224	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs593966	0.89[ASN][1000 genomes]
rs597881	0.89[ASN][1000 genomes]
rs607961	0.90[ASN][1000 genomes]
rs608228	0.88[ASN][1000 genomes]
rs610222	0.87[ASN][1000 genomes]
rs613083	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs613443	0.89[ASN][1000 genomes]
rs615165	0.82[ASN][1000 genomes]
rs615837	0.87[ASN][1000 genomes]
rs617140	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs62328865	0.89[ASN][1000 genomes]
rs62328871	0.88[ASN][1000 genomes]
rs625546	0.87[ASN][1000 genomes]
rs627249	0.80[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs641962	0.89[ASN][1000 genomes]
rs644797	0.84[ASN][1000 genomes]
rs6534082	0.96[ASN][1000 genomes]
rs662086	0.89[ASN][1000 genomes]
rs674514	0.87[ASN][1000 genomes]
rs678177	0.90[ASN][1000 genomes]
rs6820061	0.98[ASN][1000 genomes]
rs6820108	0.95[ASN][1000 genomes]
rs6823125	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823295	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825105	0.98[ASN][1000 genomes]
rs6828552	1.00[ASN][1000 genomes]
rs6837896	0.95[ASN][1000 genomes]
rs6842393	0.98[ASN][1000 genomes]
rs6842719	0.81[ASN][1000 genomes]
rs6848037	0.98[ASN][1000 genomes]
rs6848598	0.98[ASN][1000 genomes]
rs6851494	0.99[ASN][1000 genomes]
rs6857041	1.00[ASN][1000 genomes]
rs6857232	1.00[ASN][1000 genomes]
rs705838	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs705841	0.81[ASN][1000 genomes]
rs7435948	1.00[ASN][1000 genomes]
rs7439663	0.98[ASN][1000 genomes]
rs7655439	0.96[ASN][1000 genomes]
rs7655519	0.96[ASN][1000 genomes]
rs7671232	0.98[ASN][1000 genomes]
rs7671359	0.98[ASN][1000 genomes]
rs7671434	0.96[ASN][1000 genomes]
rs7671515	0.98[ASN][1000 genomes]
rs7671562	0.98[ASN][1000 genomes]
rs7677274	0.91[ASN][1000 genomes]
rs7679658	0.98[ASN][1000 genomes]
rs7681830	0.95[ASN][1000 genomes]
rs7685325	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686670	0.93[ASN][1000 genomes]
rs7695706	0.98[ASN][1000 genomes]
rs7699653	0.88[ASN][1000 genomes]
rs788647	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs788650	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs788651	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs788655	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs788658	0.81[ASN][1000 genomes]
rs788661	0.88[ASN][1000 genomes]
rs788662	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs788668	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9307452	1.00[ASN][1000 genomes]
rs9637622	0.98[ASN][1000 genomes]
rs9637623	0.98[ASN][1000 genomes]
rs9790637	0.98[ASN][1000 genomes]
rs9995675	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1008236	chr4:118989467-119154024	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999152	chr4:119001143-119138322	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv34038	chr4:119035124-119455391	Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119052200-119068400	Strong transcription	Dnd41	blood
2	chr4:119052800-119053400	Enhancers	HMEC	breast
3	chr4:119053000-119054600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:119053000-119055600	Weak transcription	Brain Anterior Caudate	brain
5	chr4:119053200-119053800	ZNF genes & repeats	Fetal Stomach	stomach
6	chr4:119053200-119054600	ZNF genes & repeats	Pancreas	Pancrea
7	chr4:119053200-119056800	Enhancers	Primary neutrophils fromperipheralblood	blood

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