Variant report

Variant	rs4833566
Chromosome Location	chr4:119117533-119117534
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 191 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs10000812	0.83[ASN][1000 genomes]
rs10008049	0.95[ASN][1000 genomes]
rs10014096	0.94[ASN][1000 genomes]
rs10015232	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10016285	0.95[ASN][1000 genomes]
rs10020473	0.86[ASN][1000 genomes]
rs10021128	0.86[ASN][1000 genomes]
rs10021781	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10023699	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10026541	0.91[ASN][1000 genomes]
rs10027013	0.83[ASN][1000 genomes]
rs10027893	0.86[ASN][1000 genomes]
rs10033308	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10033412	0.93[ASN][1000 genomes]
rs1022287	0.85[CEU][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs1022288	0.85[CEU][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10440400	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11098422	0.86[ASN][1000 genomes]
rs11098424	0.90[ASN][1000 genomes]
rs11098425	0.90[ASN][1000 genomes]
rs11098427	0.95[ASN][1000 genomes]
rs11098428	0.95[ASN][1000 genomes]
rs11722962	0.86[ASN][1000 genomes]
rs11728724	0.94[ASN][1000 genomes]
rs11730541	0.91[ASN][1000 genomes]
rs11733562	0.86[ASN][1000 genomes]
rs11736688	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11937777	0.93[ASN][1000 genomes]
rs11947071	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12499751	0.86[ASN][1000 genomes]
rs12505156	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508017	0.93[ASN][1000 genomes]
rs12711064	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13104129	0.86[ASN][1000 genomes]
rs13111697	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13114621	0.93[ASN][1000 genomes]
rs13114895	0.93[ASN][1000 genomes]
rs13126882	0.91[ASN][1000 genomes]
rs13127321	0.91[ASN][1000 genomes]
rs13134901	0.95[ASN][1000 genomes]
rs13135646	0.84[ASN][1000 genomes]
rs13139875	0.86[ASN][1000 genomes]
rs1319938	0.93[ASN][1000 genomes]
rs1514657	0.86[JPT][hapmap]
rs1514659	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1994384	0.86[ASN][1000 genomes]
rs2049362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140475	0.98[ASN][1000 genomes]
rs2389510	0.80[CHB][hapmap];0.86[ASN][1000 genomes]
rs2389511	0.86[ASN][1000 genomes]
rs2389512	0.86[ASN][1000 genomes]
rs2389513	0.90[ASN][1000 genomes]
rs2389514	0.90[ASN][1000 genomes]
rs2389515	0.90[ASN][1000 genomes]
rs2389516	0.90[ASN][1000 genomes]
rs2389517	0.90[ASN][1000 genomes]
rs2389518	0.90[ASN][1000 genomes]
rs2389519	0.90[ASN][1000 genomes]
rs2389520	0.91[ASN][1000 genomes]
rs2389521	0.89[ASN][1000 genomes]
rs2389522	0.91[ASN][1000 genomes]
rs2389523	0.91[ASN][1000 genomes]
rs2389524	0.91[ASN][1000 genomes]
rs2389525	0.93[ASN][1000 genomes]
rs2389526	0.93[ASN][1000 genomes]
rs2389527	0.93[ASN][1000 genomes]
rs2389620	0.83[ASN][1000 genomes]
rs2892787	0.86[ASN][1000 genomes]
rs2892788	0.91[ASN][1000 genomes]
rs2892789	0.91[ASN][1000 genomes]
rs2892790	0.91[ASN][1000 genomes]
rs2892791	0.93[ASN][1000 genomes]
rs2892799	0.99[ASN][1000 genomes]
rs4131600	0.95[ASN][1000 genomes]
rs4240316	0.93[ASN][1000 genomes]
rs4240317	0.93[ASN][1000 genomes]
rs4240318	0.93[ASN][1000 genomes]
rs4279285	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs4280816	0.93[ASN][1000 genomes]
rs4362895	0.88[ASN][1000 genomes]
rs4397073	0.95[ASN][1000 genomes]
rs4437319	0.86[ASN][1000 genomes]
rs4452509	0.93[ASN][1000 genomes]
rs4546313	0.95[ASN][1000 genomes]
rs4558930	0.84[ASN][1000 genomes]
rs4566725	0.93[ASN][1000 genomes]
rs4569819	0.93[ASN][1000 genomes]
rs4576085	0.93[ASN][1000 genomes]
rs4616829	0.93[ASN][1000 genomes]
rs4833560	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4833561	0.95[ASN][1000 genomes]
rs4833563	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4833567	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4834656	0.86[ASN][1000 genomes]
rs4834657	0.93[ASN][1000 genomes]
rs4834658	0.84[ASN][1000 genomes]
rs4834660	0.95[ASN][1000 genomes]
rs4834661	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4834664	0.95[ASN][1000 genomes]
rs4834665	0.95[ASN][1000 genomes]
rs4834666	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4834679	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4834681	0.81[ASN][1000 genomes]
rs581739	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs582448	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs586073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs586224	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs593966	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs597881	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs607961	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs608228	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs610222	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs613083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs613443	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs615165	0.87[ASN][1000 genomes]
rs615837	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs617140	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs62328865	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62328871	0.93[ASN][1000 genomes]
rs625546	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs627249	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs641962	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs644797	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6534082	0.91[ASN][1000 genomes]
rs662086	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs674514	0.92[ASN][1000 genomes]
rs678177	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6820061	0.93[ASN][1000 genomes]
rs6820108	0.90[ASN][1000 genomes]
rs6823125	0.95[ASN][1000 genomes]
rs6823295	0.95[ASN][1000 genomes]
rs6825105	0.93[ASN][1000 genomes]
rs6828232	0.81[ASN][1000 genomes]
rs6828552	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6837896	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842393	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6848037	0.93[ASN][1000 genomes]
rs6848598	0.93[ASN][1000 genomes]
rs6851494	0.94[ASN][1000 genomes]
rs6857041	0.95[ASN][1000 genomes]
rs6857232	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs705838	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs705841	0.85[ASN][1000 genomes]
rs7435948	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7439663	0.93[ASN][1000 genomes]
rs7655439	0.91[ASN][1000 genomes]
rs7655519	0.91[ASN][1000 genomes]
rs7671232	0.93[ASN][1000 genomes]
rs7671359	0.93[ASN][1000 genomes]
rs7671434	0.91[ASN][1000 genomes]
rs7671515	0.93[ASN][1000 genomes]
rs7671562	0.93[ASN][1000 genomes]
rs7677274	0.86[ASN][1000 genomes]
rs7679658	0.93[ASN][1000 genomes]
rs7681830	0.90[ASN][1000 genomes]
rs7685325	0.95[ASN][1000 genomes]
rs7686670	0.88[ASN][1000 genomes]
rs7695706	0.93[ASN][1000 genomes]
rs7699653	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs788647	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs788650	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs788651	0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs788655	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs788656	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs788658	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs788661	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs788662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs788668	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs788669	0.81[ASN][1000 genomes]
rs9307452	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9637622	0.93[ASN][1000 genomes]
rs9637623	0.93[ASN][1000 genomes]
rs9790637	0.93[ASN][1000 genomes]
rs9995675	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1008236	chr4:118989467-119154024	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999152	chr4:119001143-119138322	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv34038	chr4:119035124-119455391	Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1001138	chr4:119095147-119461837	Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv537230	chr4:119095147-119461837	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv4485	chr4:119103349-119144334	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3524414	chr4:119106398-119131703	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
11	esv3524415	chr4:119106398-119131703	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
12	nsv595283	chr4:119114424-119130109	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
13	nsv511250	chr4:119115366-119134308	Enhancers ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
14	nsv966561	chr4:119115482-119130733	Enhancers ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
15	nsv10556	chr4:119115884-119130544	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
16	nsv595284	chr4:119117533-119129669	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
17	nsv595285	chr4:119117533-119130109	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119112000-119125200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:119116000-119121400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:119117400-119118600	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links