Variant report

Variant	rs11098450
Chromosome Location	chr4:119714711-119714712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10011672	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10014208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10470914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10518322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10518323	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10518324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11098449	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11722833	0.91[CEU][hapmap];0.82[AMR][1000 genomes]
rs11730993	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11736024	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12500272	0.87[AMR][1000 genomes]
rs12505513	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12506295	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12506576	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12509236	0.87[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes]
rs12509654	0.91[CEU][hapmap];0.86[AMR][1000 genomes]
rs12649666	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13109947	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13109966	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13114964	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13120798	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13128195	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17050423	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2303513	0.82[CEU][hapmap]
rs298977	0.86[CEU][hapmap]
rs298980	0.86[CEU][hapmap]
rs298981	0.86[CEU][hapmap]
rs298989	0.86[AMR][1000 genomes]
rs298990	0.83[CEU][hapmap];0.86[AMR][1000 genomes]
rs34384498	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34616305	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34730066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35868882	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3775836	0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4833592	0.81[CHB][hapmap]
rs4834699	0.87[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs58450672	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67175714	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7676832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7691479	1.00[YRI][hapmap]
rs960738	0.82[JPT][hapmap]
rs960739	0.91[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs9997799	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119625800-119718000	Weak transcription	Hela-S3	cervix
2	chr4:119678600-119717400	Weak transcription	Esophagus	oesophagus
3	chr4:119679000-119717600	Weak transcription	Colonic Mucosa	Colon
4	chr4:119688600-119715800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:119688600-119717400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:119688600-119717400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:119688600-119732600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:119688800-119716800	Weak transcription	Fetal Kidney	kidney
9	chr4:119689400-119716200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr4:119689400-119716600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:119689400-119716800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr4:119689600-119717600	Weak transcription	K562	blood
13	chr4:119690000-119717600	Weak transcription	Primary T cells from cord blood	blood
14	chr4:119694000-119715000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:119694000-119717400	Weak transcription	Ovary	ovary
16	chr4:119694400-119716600	Weak transcription	Aorta	Aorta
17	chr4:119695000-119717600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:119696400-119715600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr4:119696800-119717400	Weak transcription	Spleen	Spleen
20	chr4:119702600-119717600	Weak transcription	Fetal Brain Male	brain
21	chr4:119703400-119732200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr4:119703800-119738200	Strong transcription	Placenta	Placenta
23	chr4:119704200-119740000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:119704400-119717600	Weak transcription	Pancreas	Pancrea
25	chr4:119704600-119715600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:119704600-119716400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr4:119704600-119717600	Weak transcription	Small Intestine	intestine
28	chr4:119704800-119715600	Weak transcription	Primary B cells from cord blood	blood
29	chr4:119704800-119735200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:119705200-119716400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:119705200-119716400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:119705200-119716600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:119705200-119717400	Weak transcription	Left Ventricle	heart
34	chr4:119705200-119717400	Weak transcription	HMEC	breast
35	chr4:119705200-119717600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr4:119705200-119717800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr4:119705200-119721200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr4:119705200-119748200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr4:119705600-119715400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:119706400-119716600	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr4:119706800-119714800	Weak transcription	Dnd41	blood
42	chr4:119707800-119730800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr4:119708000-119717000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr4:119708000-119732800	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr4:119708200-119716400	Weak transcription	Fetal Lung	lung
46	chr4:119708400-119717200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr4:119708400-119723000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:119708800-119722200	Strong transcription	Liver	Liver
49	chr4:119709400-119716400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:119709600-119719800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links