Variant report

Variant	rs11098891
Chromosome Location	chr4:127661852-127661853
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127661681..127663731-chr4:127834793..127837662,2	K562	blood:
2	chr4:127659055..127662834-chr4:127664504..127669791,5	K562	blood:
3	chr4:127649446..127654981-chr4:127658045..127662615,6	K562	blood:
4	chr4:127661132..127664302-chr4:127673229..127676858,3	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1014773	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461207	0.87[ASN][1000 genomes]
rs10857116	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10857117	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098892	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098893	1.00[ASN][1000 genomes]
rs11098896	0.87[ASN][1000 genomes]
rs11098898	0.87[ASN][1000 genomes]
rs1157308	1.00[ASN][1000 genomes]
rs1167190	0.87[ASN][1000 genomes]
rs11935382	0.87[ASN][1000 genomes]
rs11940501	1.00[ASN][1000 genomes]
rs11941222	0.87[ASN][1000 genomes]
rs12163770	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12503440	1.00[ASN][1000 genomes]
rs12504330	0.87[ASN][1000 genomes]
rs12507115	0.87[ASN][1000 genomes]
rs12647109	1.00[ASN][1000 genomes]
rs12650177	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111309	0.87[ASN][1000 genomes]
rs13112652	1.00[ASN][1000 genomes]
rs13143010	1.00[ASN][1000 genomes]
rs13148138	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13151312	0.92[AFR][1000 genomes]
rs13152826	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393991	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1503604	1.00[ASN][1000 genomes]
rs1503605	0.87[ASN][1000 genomes]
rs1503606	0.87[ASN][1000 genomes]
rs1503608	0.87[ASN][1000 genomes]
rs1503610	1.00[ASN][1000 genomes]
rs1503611	0.87[ASN][1000 genomes]
rs1503614	0.87[ASN][1000 genomes]
rs1503631	1.00[ASN][1000 genomes]
rs1532768	0.87[ASN][1000 genomes]
rs1587744	0.87[ASN][1000 genomes]
rs1604719	1.00[ASN][1000 genomes]
rs1604724	0.87[ASN][1000 genomes]
rs17011528	0.87[ASN][1000 genomes]
rs17203028	0.87[ASN][1000 genomes]
rs1875740	1.00[ASN][1000 genomes]
rs1948827	0.87[ASN][1000 genomes]
rs1955281	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976483	0.87[ASN][1000 genomes]
rs2013778	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2013864	0.87[ASN][1000 genomes]
rs2089061	0.87[ASN][1000 genomes]
rs2134641	1.00[ASN][1000 genomes]
rs2134645	1.00[ASN][1000 genomes]
rs2174183	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2174184	1.00[ASN][1000 genomes]
rs2391099	1.00[CHB][hapmap]
rs28666008	0.87[ASN][1000 genomes]
rs28742896	0.87[ASN][1000 genomes]
rs28811377	0.87[ASN][1000 genomes]
rs28876486	0.87[ASN][1000 genomes]
rs2893192	1.00[ASN][1000 genomes]
rs4618330	0.88[EUR][1000 genomes]
rs4834142	1.00[ASN][1000 genomes]
rs5004421	0.84[AFR][1000 genomes]
rs55791209	0.87[ASN][1000 genomes]
rs62324217	0.87[ASN][1000 genomes]
rs6534583	0.87[ASN][1000 genomes]
rs6812442	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829454	0.87[ASN][1000 genomes]
rs6830097	1.00[ASN][1000 genomes]
rs6835402	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6848985	0.87[ASN][1000 genomes]
rs6856064	0.87[ASN][1000 genomes]
rs6858446	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7654869	1.00[ASN][1000 genomes]
rs7671513	0.85[AFR][1000 genomes]
rs7672155	0.87[ASN][1000 genomes]
rs7676848	1.00[ASN][1000 genomes]
rs7681140	0.87[ASN][1000 genomes]
rs7686181	0.87[ASN][1000 genomes]
rs7691822	0.87[ASN][1000 genomes]
rs7694861	0.87[ASN][1000 genomes]
rs7696445	0.87[ASN][1000 genomes]
rs7696767	0.87[ASN][1000 genomes]
rs969315	0.87[ASN][1000 genomes]
rs986907	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013854	chr4:127508969-127663216	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1007477	chr4:127561735-127726291	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv537244	chr4:127561735-127726291	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2752024	chr4:127584697-127671942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv595386	chr4:127597069-127668828	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1028609	chr4:127597319-127664629	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv879907	chr4:127646765-127709859	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	nsv879908	chr4:127646765-127749390	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127660600-127666800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:127661600-127662200	Flanking Active TSS	K562	blood

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