Variant report

Variant	rs1503610
Chromosome Location	chr4:127769398-127769399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1014773	1.00[ASN][1000 genomes]
rs10461207	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10857116	0.89[ASN][1000 genomes]
rs10857117	1.00[ASN][1000 genomes]
rs11098891	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11098892	1.00[ASN][1000 genomes]
rs11098893	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11098896	0.87[ASN][1000 genomes]
rs11098898	0.87[ASN][1000 genomes]
rs1157308	1.00[ASN][1000 genomes]
rs1167190	0.87[ASN][1000 genomes]
rs11935382	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11940501	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941222	0.87[ASN][1000 genomes]
rs12163770	1.00[ASN][1000 genomes]
rs12503440	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504330	0.87[ASN][1000 genomes]
rs12507115	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12647109	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12650177	1.00[ASN][1000 genomes]
rs13111309	0.87[ASN][1000 genomes]
rs13112652	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120973	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13143010	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13148138	1.00[ASN][1000 genomes]
rs13152826	1.00[ASN][1000 genomes]
rs1393991	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1503604	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503605	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1503606	0.87[ASN][1000 genomes]
rs1503608	0.87[ASN][1000 genomes]
rs1503611	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1503612	0.82[AFR][1000 genomes]
rs1503614	0.87[ASN][1000 genomes]
rs1503631	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532768	0.87[ASN][1000 genomes]
rs1587744	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1604719	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1604724	0.87[ASN][1000 genomes]
rs17011528	0.87[ASN][1000 genomes]
rs17203028	0.87[ASN][1000 genomes]
rs1875740	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1948827	0.87[ASN][1000 genomes]
rs1955281	1.00[ASN][1000 genomes]
rs1976483	0.87[ASN][1000 genomes]
rs2013778	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013864	0.87[ASN][1000 genomes]
rs2089061	0.87[ASN][1000 genomes]
rs2134641	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2134645	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2174184	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs28666008	0.87[ASN][1000 genomes]
rs28742896	0.87[ASN][1000 genomes]
rs28811377	0.87[ASN][1000 genomes]
rs28876486	0.87[ASN][1000 genomes]
rs2893192	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834142	1.00[ASN][1000 genomes]
rs55791209	0.87[ASN][1000 genomes]
rs62324217	0.87[ASN][1000 genomes]
rs6534583	0.87[ASN][1000 genomes]
rs6812442	1.00[ASN][1000 genomes]
rs6829454	0.87[ASN][1000 genomes]
rs6830097	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848985	0.87[ASN][1000 genomes]
rs6856064	0.87[ASN][1000 genomes]
rs7654869	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7672155	0.87[ASN][1000 genomes]
rs7676848	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681140	0.87[ASN][1000 genomes]
rs7686181	0.87[ASN][1000 genomes]
rs7691822	0.87[ASN][1000 genomes]
rs7694861	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7696445	0.87[ASN][1000 genomes]
rs7696767	0.87[ASN][1000 genomes]
rs969315	0.87[ASN][1000 genomes]
rs986907	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv879912	chr4:127706053-127775563	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3367258	chr4:127749396-127772702	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127765200-127771600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:127767400-127770600	Weak transcription	HMEC	breast
3	chr4:127767600-127770600	Weak transcription	K562	blood

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