Variant report

Variant	rs11099650
Chromosome Location	chr4:85483950-85483951
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13132912	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17009168	0.82[MEX][hapmap];0.94[YRI][hapmap]
rs34960675	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6842038	1.00[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11099650	NCRNA00247	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85481400-85484200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:85482200-85484600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:85482600-85484200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:85483000-85484000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:85483000-85484000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:85483000-85484200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:85483000-85489600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:85483200-85484000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr4:85483200-85484000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr4:85483400-85484000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:85483600-85484200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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