Variant report

Variant	rs6842038
Chromosome Location	chr4:85513187-85513188
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10446678	0.82[EUR][1000 genomes]
rs11099650	1.00[YRI][hapmap]
rs17009168	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1838038	0.86[CHB][hapmap]
rs2120091	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs6853486	0.82[CHB][hapmap]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85507800-85516000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:85507800-85518000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:85508000-85514000	Weak transcription	Stomach Mucosa	stomach
4	chr4:85508800-85531000	Weak transcription	Pancreas	Pancrea
5	chr4:85509400-85514000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:85509400-85514600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:85510000-85516200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:85511200-85516600	Enhancers	Fetal Intestine Large	intestine
9	chr4:85511200-85516600	Enhancers	Fetal Intestine Small	intestine
10	chr4:85511600-85518400	Enhancers	Fetal Heart	heart
11	chr4:85511800-85514400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:85512000-85513400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:85512000-85514400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:85512000-85517000	Weak transcription	NHEK	skin
15	chr4:85512000-85517200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr4:85512000-85531000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:85512200-85514000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr4:85512200-85514800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:85512600-85513400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr4:85512600-85513800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr4:85513000-85513200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr4:85513000-85514800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr4:85513000-85514800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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