Variant report

Variant	rs1838038
Chromosome Location	chr4:85570364-85570365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85564288..85566182-chr4:85568579..85571461,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11735449	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11939300	0.85[YRI][hapmap]
rs13110728	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17009168	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs17009245	0.85[YRI][hapmap]
rs2120091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35928242	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3747681	0.85[YRI][hapmap]
rs6842038	0.86[CHB][hapmap]
rs6853486	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85518600-85574800	Weak transcription	Stomach Mucosa	stomach
2	chr4:85526800-85583000	Weak transcription	Gastric	stomach
3	chr4:85529400-85581600	Weak transcription	Ovary	ovary
4	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:85532400-85571200	Weak transcription	Pancreas	Pancrea
6	chr4:85544600-85572400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:85545200-85576400	Weak transcription	Esophagus	oesophagus
8	chr4:85546600-85570400	Weak transcription	Small Intestine	intestine
9	chr4:85556600-85570400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:85556600-85572200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:85556800-85570600	Weak transcription	Lung	lung
12	chr4:85556800-85570600	Weak transcription	NHEK	skin
13	chr4:85560600-85570600	Weak transcription	Left Ventricle	heart
14	chr4:85563400-85570600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:85563600-85570600	Weak transcription	Fetal Intestine Small	intestine
16	chr4:85564800-85587800	Weak transcription	Fetal Kidney	kidney
17	chr4:85565000-85570600	Weak transcription	Placenta	Placenta
18	chr4:85565400-85570600	Weak transcription	Aorta	Aorta
19	chr4:85566400-85570400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr4:85567200-85570400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr4:85567800-85571000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:85567800-85571200	Enhancers	Fetal Heart	heart
23	chr4:85568000-85570400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr4:85568200-85570800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:85568400-85573200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:85568600-85571000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr4:85568600-85572200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:85568600-85572400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:85568600-85573200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:85568600-85574000	Strong transcription	Duodenum Mucosa	Duodenum
31	chr4:85568800-85570400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr4:85568800-85571000	Enhancers	Fetal Lung	lung
33	chr4:85568800-85578600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr4:85568800-85589600	Weak transcription	Brain Angular Gyrus	brain
35	chr4:85569000-85570800	Enhancers	Colon Smooth Muscle	Colon
36	chr4:85569200-85570800	Weak transcription	Brain Hippocampus Middle	brain
37	chr4:85569200-85571600	Strong transcription	HMEC	breast
38	chr4:85569200-85572800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr4:85569200-85587200	Weak transcription	Brain Anterior Caudate	brain
40	chr4:85569400-85570400	Weak transcription	Liver	Liver
41	chr4:85569400-85571000	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr4:85569600-85570600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:85569600-85570600	Weak transcription	Fetal Intestine Large	intestine
44	chr4:85569600-85570600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr4:85569600-85577600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr4:85569600-85579200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr4:85569600-85582600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr4:85569800-85570400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr4:85569800-85570800	Genic enhancers	HUES48 Cell Line	embryonic stem cell
50	chr4:85569800-85570800	Genic enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links