Variant report

Variant	rs2120091
Chromosome Location	chr4:85537825-85537826
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85523808..85526163-chr4:85537761..85540086,2	MCF-7	breast:
2	chr4:85502246..85504834-chr4:85536491..85539087,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163624	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10000060	0.92[ASN][1000 genomes]
rs10446678	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13110728	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17009168	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35928242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6842038	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs6853486	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7689916	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830333	chr4:85520643-85545644	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85515400-85544400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:85518600-85574800	Weak transcription	Stomach Mucosa	stomach
3	chr4:85520400-85559400	Weak transcription	Fetal Heart	heart
4	chr4:85525000-85564200	Weak transcription	Placenta	Placenta
5	chr4:85526800-85583000	Weak transcription	Gastric	stomach
6	chr4:85528200-85548200	Weak transcription	Colonic Mucosa	Colon
7	chr4:85528400-85564000	Weak transcription	Fetal Kidney	kidney
8	chr4:85529400-85581600	Weak transcription	Ovary	ovary
9	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:85532000-85538000	Weak transcription	Brain Anterior Caudate	brain
11	chr4:85532200-85544200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:85532400-85538400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:85532400-85540400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr4:85532400-85556800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:85532400-85571200	Weak transcription	Pancreas	Pancrea
16	chr4:85532600-85538000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:85532600-85538000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr4:85532600-85538000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:85532600-85540600	Weak transcription	Fetal Intestine Large	intestine
20	chr4:85533200-85541400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:85536400-85538800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr4:85536400-85541800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:85536600-85538600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:85536600-85539600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:85536600-85552000	Weak transcription	NHEK	skin
26	chr4:85536800-85539800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:85536800-85540200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr4:85536800-85540200	Weak transcription	Fetal Intestine Small	intestine
29	chr4:85536800-85540800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:85536800-85544800	Weak transcription	Esophagus	oesophagus
31	chr4:85536800-85546400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr4:85536800-85556600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr4:85536800-85570200	Weak transcription	Fetal Stomach	stomach
34	chr4:85537200-85568600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr4:85537600-85542400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:85537800-85539000	Strong transcription	HMEC	breast

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