Variant report

Variant	rs10446678
Chromosome Location	chr4:85534159-85534160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10000060	0.83[ASN][1000 genomes]
rs13110728	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17009168	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2120091	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35928242	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6842038	0.82[EUR][1000 genomes]
rs6853486	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830333	chr4:85520643-85545644	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85515400-85544400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:85518600-85536200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:85518600-85574800	Weak transcription	Stomach Mucosa	stomach
4	chr4:85519000-85536000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:85520400-85559400	Weak transcription	Fetal Heart	heart
6	chr4:85524600-85536400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:85524600-85536400	Weak transcription	Esophagus	oesophagus
8	chr4:85525000-85564200	Weak transcription	Placenta	Placenta
9	chr4:85526800-85583000	Weak transcription	Gastric	stomach
10	chr4:85527800-85535400	Strong transcription	Fetal Intestine Small	intestine
11	chr4:85528200-85548200	Weak transcription	Colonic Mucosa	Colon
12	chr4:85528400-85564000	Weak transcription	Fetal Kidney	kidney
13	chr4:85528800-85534600	Weak transcription	Right Ventricle	heart
14	chr4:85529200-85534400	Weak transcription	Lung	lung
15	chr4:85529400-85581600	Weak transcription	Ovary	ovary
16	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:85531400-85536400	Weak transcription	Fetal Stomach	stomach
18	chr4:85531800-85536200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:85531800-85536200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:85532000-85538000	Weak transcription	Brain Anterior Caudate	brain
21	chr4:85532200-85544200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr4:85532400-85536000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:85532400-85536000	Weak transcription	NHEK	skin
24	chr4:85532400-85536600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:85532400-85538400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr4:85532400-85540400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:85532400-85556800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr4:85532400-85571200	Weak transcription	Pancreas	Pancrea
29	chr4:85532600-85536000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:85532600-85538000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr4:85532600-85538000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr4:85532600-85538000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr4:85532600-85540600	Weak transcription	Fetal Intestine Large	intestine
34	chr4:85533200-85536000	Weak transcription	HMEC	breast
35	chr4:85533200-85536200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:85533200-85536400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:85533200-85541400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr4:85533600-85536800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr4:85533800-85536400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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