Variant report

Variant	rs11099667
Chromosome Location	chr4:148643681-148643682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11725260	0.95[ASN][1000 genomes]
rs11726957	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12502667	0.84[ASN][1000 genomes]
rs12646582	0.87[ASN][1000 genomes]
rs13109759	0.91[ASN][1000 genomes]
rs13128620	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13144139	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36052332	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4835446	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4835448	0.84[ASN][1000 genomes]
rs56224422	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7666807	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs905606	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148635600-148646800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:148640400-148645800	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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