Variant report
| Variant | rs13144139 |
|---|---|
| Chromosome Location | chr4:148641915-148641916 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:148641297..148643621-chr4:148651821..148654094,2 | MCF-7 | breast: | |
| 2 | chr4:148640121..148643037-chr4:148653637..148655326,2 | MCF-7 | breast: | |
| 3 | chr4:148641449..148643779-chr4:148649029..148651151,2 | MCF-7 | breast: | |
| 4 | chr4:148638375..148640949-chr4:148641559..148643436,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000071205 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11099667 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11725260 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11726957 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12502667 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12646582 | 0.80[ASN][1000 genomes] |
| rs13109759 | 0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13128620 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1969102 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs36052332 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4835093 | 0.90[EUR][1000 genomes] |
| rs4835446 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4835448 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs56224422 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6535556 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6827786 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6828600 | 0.82[EUR][1000 genomes] |
| rs6836509 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72951414 | 0.83[EUR][1000 genomes] |
| rs7661297 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7666807 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7669809 | 0.80[EUR][1000 genomes] |
| rs7673393 | 0.83[EUR][1000 genomes] |
| rs905606 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028958 | chr4:148377752-148793485 | Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv498083 | chr4:148519825-148917583 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:148635600-148646800 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 2 | chr4:148640400-148645800 | Weak transcription | GM12878-XiMat | blood |
