Variant report

Variant	rs4835093
Chromosome Location	chr4:148655276-148655277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148654907..148656449-chr4:148656457..148658051,2	MCF-7	breast:
2	chr4:148604146..148606319-chr4:148653859..148655538,2	K562	blood:
3	chr4:148640121..148643037-chr4:148653637..148655326,2	MCF-7	breast:
4	chr4:148655205..148657346-chr4:148658350..148660032,2	MCF-7	breast:
5	chr4:148655157..148657016-chr4:148664536..148666375,2	MCF-7	breast:
6	chr4:148534491..148537230-chr4:148653257..148655916,2	MCF-7	breast:
7	chr4:148649646..148651392-chr4:148654953..148657402,2	K562	blood:

Variant related genes	Relation type
ENSG00000164169	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10776520	1.00[CEU][hapmap]
rs11725260	0.94[EUR][1000 genomes]
rs11726957	0.83[EUR][1000 genomes]
rs12502667	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13119467	0.85[CEU][hapmap];0.88[TSI][hapmap]
rs13128620	0.83[EUR][1000 genomes]
rs13144139	0.90[EUR][1000 genomes]
rs1969102	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28505821	0.82[EUR][1000 genomes]
rs36052332	0.83[EUR][1000 genomes]
rs4490438	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4835446	0.83[EUR][1000 genomes]
rs4835448	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56224422	0.83[EUR][1000 genomes]
rs56946313	0.81[AMR][1000 genomes]
rs6535556	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[GIH][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6828600	1.00[CEU][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6836509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7661297	1.00[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs7666807	0.83[EUR][1000 genomes]
rs7669809	0.83[EUR][1000 genomes]
rs905606	0.82[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148651600-148656200	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr4:148652200-148655400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:148652200-148655800	Active TSS	HSMM	muscle
4	chr4:148652200-148656400	Active TSS	Stomach Smooth Muscle	stomach
5	chr4:148652400-148655400	Active TSS	HSMMtube	muscle
6	chr4:148652400-148655400	Active TSS	NHLF	lung
7	chr4:148652400-148655600	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr4:148652400-148655600	Active TSS	NHDF-Ad	bronchial
9	chr4:148652400-148656000	Active TSS	Rectal Smooth Muscle	rectum
10	chr4:148652400-148657400	Active TSS	Right Ventricle	heart
11	chr4:148652400-148657800	Active TSS	Aorta	Aorta
12	chr4:148652600-148655800	Active TSS	Lung	lung
13	chr4:148652600-148656000	Active TSS	Left Ventricle	heart
14	chr4:148652800-148656000	Active TSS	Colon Smooth Muscle	Colon
15	chr4:148653000-148655600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:148653600-148655400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr4:148654000-148655400	Flanking Active TSS	NH-A	brain
18	chr4:148654000-148655600	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr4:148654000-148656000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:148654000-148656000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:148654000-148656000	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr4:148654000-148656000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr4:148654200-148655400	Flanking Active TSS	Fetal Stomach	stomach
24	chr4:148654200-148655600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
25	chr4:148654200-148655600	Flanking Active TSS	Fetal Lung	lung
26	chr4:148654200-148655600	Flanking Active TSS	HMEC	breast
27	chr4:148654200-148655600	Flanking Active TSS	HUVEC	blood vessel
28	chr4:148654200-148655800	Flanking Active TSS	Fetal Muscle Leg	muscle
29	chr4:148654200-148656000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr4:148654200-148656000	Flanking Active TSS	Osteobl	bone
31	chr4:148654400-148655400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr4:148654400-148655400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr4:148654400-148655400	Flanking Active TSS	Psoas Muscle	Psoas
34	chr4:148654400-148655400	Flanking Active TSS	A549	lung
35	chr4:148654400-148655600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
36	chr4:148654400-148655600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
37	chr4:148654400-148655600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:148654400-148655600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
39	chr4:148654400-148655800	Flanking Active TSS	Fetal Heart	heart
40	chr4:148654400-148655800	Flanking Active TSS	Hela-S3	cervix
41	chr4:148654600-148655400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr4:148654600-148655400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr4:148654600-148655400	Enhancers	Small Intestine	intestine
44	chr4:148654600-148655600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
45	chr4:148654600-148655600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:148654600-148655600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr4:148654600-148655600	Enhancers	Primary T cells fromperipheralblood	blood
48	chr4:148654600-148655800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
49	chr4:148654600-148656000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr4:148654600-148656000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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