Variant report
| Variant | rs7661297 |
|---|---|
| Chromosome Location | chr4:148625792-148625793 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:148604171..148605724-chr4:148624348..148626339,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164169 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10776520 | 1.00[CEU][hapmap];0.82[TSI][hapmap] |
| rs11725260 | 0.81[EUR][1000 genomes] |
| rs11726957 | 0.89[EUR][1000 genomes] |
| rs12502667 | 1.00[CEU][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.88[TSI][hapmap];0.88[YRI][hapmap];0.87[EUR][1000 genomes] |
| rs13119467 | 0.85[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes] |
| rs13128620 | 0.89[EUR][1000 genomes] |
| rs13144139 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs36052332 | 0.89[EUR][1000 genomes] |
| rs4835093 | 1.00[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs4835446 | 0.89[EUR][1000 genomes] |
| rs4835448 | 0.89[EUR][1000 genomes] |
| rs56224422 | 0.89[EUR][1000 genomes] |
| rs6535556 | 1.00[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs6827786 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6828600 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs6836509 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs72951414 | 0.82[EUR][1000 genomes] |
| rs7666807 | 0.89[EUR][1000 genomes] |
| rs7673393 | 0.82[EUR][1000 genomes] |
| rs905606 | 0.82[CEU][hapmap];0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028958 | chr4:148377752-148793485 | Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv498083 | chr4:148519825-148917583 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:148622800-148626400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
