Variant report

Variant	rs6827786
Chromosome Location	chr4:148645051-148645052
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12502667	0.85[AMR][1000 genomes]
rs13144139	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4835448	0.86[AMR][1000 genomes]
rs6535556	0.85[AMR][1000 genomes]
rs6836509	0.85[AMR][1000 genomes]
rs7661297	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148635600-148646800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:148640400-148645800	Weak transcription	GM12878-XiMat	blood
3	chr4:148643800-148646600	Enhancers	Fetal Intestine Large	intestine
4	chr4:148644000-148645200	Enhancers	Fetal Intestine Small	intestine
5	chr4:148644600-148646000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:148644800-148645800	Weak transcription	HepG2	liver
7	chr4:148644800-148646000	Weak transcription	Gastric	stomach
8	chr4:148644800-148652400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:148645000-148645200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:148645000-148645400	Weak transcription	Stomach Mucosa	stomach
11	chr4:148645000-148645800	Weak transcription	Adipose Nuclei	Adipose
12	chr4:148645000-148648400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:148645000-148648400	Weak transcription	NHDF-Ad	bronchial
14	chr4:148645000-148652000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:148645000-148652200	Weak transcription	Fetal Kidney	kidney
16	chr4:148645000-148652400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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