Variant report

Variant	rs11099755
Chromosome Location	chr4:151042572-151042573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11099754	0.82[ASN][1000 genomes]
rs12711270	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105443	0.85[ASN][1000 genomes]
rs13109942	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127048	0.85[ASN][1000 genomes]
rs13132633	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4301089	0.83[EUR][1000 genomes]
rs4835175	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7673545	0.84[ASN][1000 genomes]
rs7676314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151036200-151042600	Weak transcription	Brain Substantia Nigra	brain
2	chr4:151037400-151048400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:151038200-151051600	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:151038400-151043800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:151038800-151070000	Weak transcription	Ovary	ovary
6	chr4:151039000-151042600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:151039000-151048000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:151039000-151048600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:151039000-151052800	Weak transcription	Right Ventricle	heart
10	chr4:151039400-151042800	Weak transcription	Brain Anterior Caudate	brain
11	chr4:151039400-151044800	Weak transcription	Aorta	Aorta
12	chr4:151039400-151047200	Weak transcription	NHLF	lung
13	chr4:151040000-151042600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:151040800-151042600	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:151041000-151046600	Weak transcription	Fetal Heart	heart
16	chr4:151041200-151042600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:151041400-151045400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
18	chr4:151041600-151042600	Weak transcription	A549	lung
19	chr4:151041600-151042800	Weak transcription	Fetal Lung	lung
20	chr4:151041600-151047200	Weak transcription	NH-A	brain
21	chr4:151041600-151047400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:151041800-151042800	Weak transcription	Osteobl	bone
23	chr4:151041800-151047200	Weak transcription	HSMMtube	muscle
24	chr4:151041800-151047200	Weak transcription	NHDF-Ad	bronchial
25	chr4:151042000-151044000	Weak transcription	HSMM	muscle
26	chr4:151042200-151044800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:151042400-151044200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:151042400-151044200	ZNF genes & repeats	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links