Variant report

Variant	rs7676314
Chromosome Location	chr4:151046586-151046587
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11099754	0.80[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.82[ASN][1000 genomes]
rs11099755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12711270	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105443	0.85[ASN][1000 genomes]
rs13109942	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127048	0.85[ASN][1000 genomes]
rs13132633	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4301089	0.83[EUR][1000 genomes]
rs4484277	0.81[JPT][hapmap]
rs4835175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7673545	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151037400-151048400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:151038200-151051600	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:151038800-151070000	Weak transcription	Ovary	ovary
4	chr4:151039000-151048000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:151039000-151048600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:151039000-151052800	Weak transcription	Right Ventricle	heart
7	chr4:151039400-151047200	Weak transcription	NHLF	lung
8	chr4:151041000-151046600	Weak transcription	Fetal Heart	heart
9	chr4:151041600-151047200	Weak transcription	NH-A	brain
10	chr4:151041600-151047400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:151041800-151047200	Weak transcription	HSMMtube	muscle
12	chr4:151041800-151047200	Weak transcription	NHDF-Ad	bronchial
13	chr4:151043000-151047200	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:151043200-151048800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:151043200-151052200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:151043400-151051600	Weak transcription	Brain Substantia Nigra	brain
17	chr4:151043600-151047800	Weak transcription	Fetal Lung	lung
18	chr4:151043800-151047200	Weak transcription	Brain Anterior Caudate	brain
19	chr4:151044200-151047200	Weak transcription	HSMM	muscle
20	chr4:151044200-151047200	Weak transcription	Osteobl	bone
21	chr4:151044200-151052800	Weak transcription	Brain Germinal Matrix	brain
22	chr4:151044400-151047200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:151044600-151049400	Enhancers	Primary B cells from peripheral blood	blood
24	chr4:151044800-151049000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr4:151045200-151099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:151045400-151047800	Enhancers	A549	lung
27	chr4:151045400-151052800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:151045800-151047000	Weak transcription	Primary B cells from cord blood	blood
29	chr4:151045800-151047200	Weak transcription	GM12878-XiMat	blood
30	chr4:151045800-151047400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:151046000-151047200	Weak transcription	Rectal Smooth Muscle	rectum

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