Variant report

Variant	rs11100150
Chromosome Location	chr4:159046387-159046388
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10005007	0.93[ASN][1000 genomes]
rs10007737	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10016822	0.87[EUR][1000 genomes]
rs10018872	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10024133	0.93[ASW][hapmap];1.00[GIH][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026876	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10517689	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11100151	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11937022	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11938464	0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502811	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12511679	0.82[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1320370	1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1320371	0.83[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2346319	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2346320	0.90[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2346381	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2346774	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2346776	0.82[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2346780	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2346783	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28499342	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28691778	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28719822	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2881473	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4324593	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4391084	0.95[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4472184	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4501266	0.86[ASW][hapmap]
rs4582199	1.00[ASW][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4627913	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4690893	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4691456	0.92[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691457	0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691458	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691459	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4691462	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4691463	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4691464	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4691465	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4691467	0.90[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6812635	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6813306	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6819576	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6821598	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832099	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6834164	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6849902	0.90[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6852646	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855420	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7671094	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7671501	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7671934	0.90[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7686997	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7695599	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8180159	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8370	0.86[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1021067	chr4:158972282-159175475	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv880293	chr4:159012365-159049020	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159042000-159046800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:159042200-159048000	Weak transcription	Fetal Intestine Large	intestine
3	chr4:159042200-159051400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:159042400-159050800	Weak transcription	Aorta	Aorta
5	chr4:159042600-159053400	Weak transcription	Right Atrium	heart
6	chr4:159042600-159053600	Weak transcription	Brain Anterior Caudate	brain
7	chr4:159042600-159060200	Weak transcription	Brain Substantia Nigra	brain
8	chr4:159042800-159046400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:159042800-159046400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:159042800-159046400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:159042800-159047000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:159042800-159047200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:159042800-159047200	Weak transcription	Adipose Nuclei	Adipose
14	chr4:159042800-159047400	Weak transcription	HMEC	breast
15	chr4:159042800-159048000	Weak transcription	HepG2	liver
16	chr4:159042800-159049000	Weak transcription	Ovary	ovary
17	chr4:159042800-159050000	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:159042800-159053400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:159042800-159053800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:159042800-159054800	Weak transcription	Fetal Heart	heart
21	chr4:159042800-159083600	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:159043200-159051200	Weak transcription	Left Ventricle	heart
23	chr4:159043800-159051400	Weak transcription	Fetal Stomach	stomach
24	chr4:159044000-159048000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:159044000-159049800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:159044200-159046800	Weak transcription	Fetal Kidney	kidney
27	chr4:159044200-159052200	Weak transcription	Osteobl	bone
28	chr4:159044400-159046400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:159044400-159047200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:159044400-159051800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr4:159044600-159046400	Weak transcription	Colon Smooth Muscle	Colon
32	chr4:159044600-159048400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:159044600-159050600	Weak transcription	NHDF-Ad	bronchial
34	chr4:159044600-159050800	Weak transcription	NHLF	lung
35	chr4:159044600-159051000	Weak transcription	HSMMtube	muscle
36	chr4:159044800-159071000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr4:159044800-159073200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:159045200-159058600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr4:159045200-159059400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr4:159045400-159050800	Strong transcription	HSMM	muscle
41	chr4:159045800-159052000	Weak transcription	Fetal Intestine Small	intestine
42	chr4:159046200-159047400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr4:159046200-159054200	Strong transcription	HUVEC	blood vessel

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