Variant report

Variant	rs11100725
Chromosome Location	chr4:142690612-142690613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1027280	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1027281	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1057972	0.87[EUR][1000 genomes]
rs11935530	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11940083	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12503072	0.89[ASN][1000 genomes]
rs12508335	0.84[EUR][1000 genomes]
rs12510030	0.86[EUR][1000 genomes]
rs13112582	0.85[EUR][1000 genomes]
rs13122930	0.85[EUR][1000 genomes]
rs13123506	0.85[EUR][1000 genomes]
rs13130898	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13139573	0.85[EUR][1000 genomes]
rs1493022	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1493025	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1602774	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1602775	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17007610	0.86[EUR][1000 genomes]
rs1873822	0.85[EUR][1000 genomes]
rs2291596	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2322300	0.84[EUR][1000 genomes]
rs2322301	0.85[EUR][1000 genomes]
rs2322302	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2857261	0.85[EUR][1000 genomes]
rs4104674	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4245934	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4254850	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4530709	0.85[EUR][1000 genomes]
rs4597912	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6537060	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6537061	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6537062	0.84[EUR][1000 genomes]
rs6537063	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6537064	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6537070	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6812078	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6819823	0.85[EUR][1000 genomes]
rs6831361	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6847434	0.85[EUR][1000 genomes]
rs6852617	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7677372	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9999808	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401979	chr4:142434442-142803321	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018949	chr4:142451823-142732365	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1030822	chr4:142487721-142706053	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3448093	chr4:142612197-142704695	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142689600-142691000	Enhancers	Osteobl	bone
2	chr4:142689600-142691200	Enhancers	NHDF-Ad	bronchial
3	chr4:142689800-142690800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:142689800-142691000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:142689800-142691000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:142689800-142691000	Enhancers	HUVEC	blood vessel
7	chr4:142690000-142690800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:142690000-142690800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:142690000-142690800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:142690000-142690800	Enhancers	NHLF	lung
11	chr4:142690000-142691000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr4:142690000-142691000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:142690000-142691000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:142690000-142693000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:142690200-142691000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr4:142690400-142690800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr4:142690400-142690800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:142690400-142691800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:142690400-142692800	Enhancers	A549	lung
20	chr4:142690600-142691000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:142690600-142693400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links