Variant report

Variant	rs7677372
Chromosome Location	chr4:142684000-142684001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:142679469..142681092-chr4:142682806..142685184,2	K562	blood:
2	chr4:142679469..142682376-chr4:142682806..142684496,2	K562	blood:
3	chr4:142683419..142685394-chr4:142837554..142840288,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1027280	0.88[EUR][1000 genomes]
rs1027281	0.89[EUR][1000 genomes]
rs1057972	0.87[EUR][1000 genomes]
rs11100725	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11935530	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11940083	0.91[EUR][1000 genomes]
rs12508335	0.84[EUR][1000 genomes]
rs12510030	0.86[EUR][1000 genomes]
rs13112582	0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs13122930	0.85[CHB][hapmap];0.85[EUR][1000 genomes]
rs13123506	0.84[EUR][1000 genomes]
rs13130898	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13139573	0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs1493022	0.88[EUR][1000 genomes]
rs1493025	0.87[EUR][1000 genomes]
rs1602774	0.86[EUR][1000 genomes]
rs1602775	0.86[EUR][1000 genomes]
rs17007610	0.91[CHB][hapmap];0.86[EUR][1000 genomes]
rs1873822	0.84[EUR][1000 genomes]
rs2291596	0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs2322300	0.83[EUR][1000 genomes]
rs2322301	0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs2322302	0.86[EUR][1000 genomes]
rs2857261	0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs4104674	0.88[EUR][1000 genomes]
rs4245934	0.88[EUR][1000 genomes]
rs4254850	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4530709	0.84[EUR][1000 genomes]
rs4597912	0.86[EUR][1000 genomes]
rs6537060	0.86[CHB][hapmap];0.90[YRI][hapmap];0.84[EUR][1000 genomes]
rs6537061	0.86[CHB][hapmap];0.84[YRI][hapmap];0.84[EUR][1000 genomes]
rs6537062	0.84[EUR][1000 genomes]
rs6537063	0.86[EUR][1000 genomes]
rs6537064	0.86[EUR][1000 genomes]
rs6537070	0.89[EUR][1000 genomes]
rs6812078	0.89[EUR][1000 genomes]
rs6819823	0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs6831361	0.86[EUR][1000 genomes]
rs6847434	0.84[EUR][1000 genomes]
rs6852617	0.86[EUR][1000 genomes]
rs996254	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9999808	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401979	chr4:142434442-142803321	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018949	chr4:142451823-142732365	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1030822	chr4:142487721-142706053	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3448093	chr4:142612197-142704695	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142680600-142685800	Enhancers	HUVEC	blood vessel
2	chr4:142681600-142688400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:142683600-142690000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:142683800-142684600	Enhancers	Fetal Heart	heart

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