Variant report

Variant	rs11101177
Chromosome Location	chr10:50803087-50803088
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50802140..50803292-chr10:50991595..50992439,4	MCF-7	breast:
2	chr10:50801763..50803293-chr10:50810457..50812694,2	K562	blood:
3	chr10:50802714..50803240-chr10:52035391..52036038,2	K562	blood:
4	chr10:50802656..50803582-chr10:50810996..50811794,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2228525	0.85[AMR][1000 genomes]
rs4253010	0.85[AMR][1000 genomes]
rs4253029	0.85[AMR][1000 genomes]
rs4253050	0.85[AMR][1000 genomes]
rs4253061	0.85[AMR][1000 genomes]
rs4253069	0.85[AMR][1000 genomes]
rs4253109	0.85[AMR][1000 genomes]
rs4253112	0.85[AMR][1000 genomes]
rs4253133	0.85[AMR][1000 genomes]
rs4253151	0.85[AMR][1000 genomes]
rs4253225	0.85[AMR][1000 genomes]
rs4838531	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1037405	chr10:50800817-50940545	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv895378	chr10:50801342-50955649	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50801200-50803600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:50801600-50803800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:50801600-50806800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:50801800-50803800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:50801800-50803800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:50802600-50803200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr10:50802800-50803200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr10:50802800-50803200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr10:50802800-50803200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:50802800-50803200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:50802800-50803200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:50802800-50803200	Enhancers	Esophagus	oesophagus
13	chr10:50802800-50803200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr10:50802800-50803200	Enhancers	Osteobl	bone
15	chr10:50802800-50804000	Enhancers	HMEC	breast
16	chr10:50803000-50803200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
17	chr10:50803000-50803200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
18	chr10:50803000-50803400	Bivalent/Poised TSS	HepG2	liver
19	chr10:50803000-50807000	Weak transcription	Hela-S3	cervix
20	chr10:50803000-50808800	Weak transcription	NHEK	skin

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