Variant report

Variant	rs4838531
Chromosome Location	chr10:50795971-50795972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11101177	0.85[AMR][1000 genomes]
rs2228525	1.00[AMR][1000 genomes]
rs4253010	1.00[AMR][1000 genomes]
rs4253029	1.00[AMR][1000 genomes]
rs4253050	1.00[AMR][1000 genomes]
rs4253061	1.00[AMR][1000 genomes]
rs4253069	1.00[AMR][1000 genomes]
rs4253109	1.00[AMR][1000 genomes]
rs4253112	1.00[AMR][1000 genomes]
rs4253133	1.00[AMR][1000 genomes]
rs4253151	1.00[AMR][1000 genomes]
rs4253225	1.00[AMR][1000 genomes]
rs4838511	0.85[AMR][1000 genomes]
rs57865789	0.87[AMR][1000 genomes]
rs60749172	0.87[AMR][1000 genomes]
rs73311046	0.87[AMR][1000 genomes]
rs73315042	0.87[AMR][1000 genomes]
rs73315047	0.87[AMR][1000 genomes]
rs73315061	0.87[AMR][1000 genomes]
rs73315065	0.87[AMR][1000 genomes]
rs73315077	0.87[AMR][1000 genomes]
rs73315085	0.87[AMR][1000 genomes]
rs73315096	0.87[AMR][1000 genomes]
rs73316905	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50794200-50797400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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