Variant report

Variant	rs11101273
Chromosome Location	chr10:49460659-49460660
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49455171..49457750-chr10:49459859..49462154,2	K562	blood:
2	chr10:49459652..49462139-chr10:49513267..49515617,2	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11101274	0.90[AMR][1000 genomes]
rs11101276	0.90[AMR][1000 genomes]
rs12098470	0.83[AMR][1000 genomes]
rs12241032	0.90[AMR][1000 genomes]
rs12241104	0.90[AMR][1000 genomes]
rs12246849	0.90[AMR][1000 genomes]
rs12252932	0.90[AMR][1000 genomes]
rs12257349	0.80[AMR][1000 genomes]
rs12262288	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv895367	chr10:49333754-49491047	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv895370	chr10:49421173-49484698	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49457000-49460800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:49458200-49460800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:49458400-49464000	Weak transcription	Right Atrium	heart
4	chr10:49458800-49460800	Enhancers	Fetal Thymus	thymus
5	chr10:49458800-49463600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:49459000-49460800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:49459000-49460800	Enhancers	Esophagus	oesophagus
8	chr10:49459000-49461400	Enhancers	Fetal Heart	heart
9	chr10:49459000-49463600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:49459000-49463600	Enhancers	HMEC	breast
11	chr10:49459200-49460800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:49459200-49460800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:49459200-49460800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:49459200-49460800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:49459200-49460800	Enhancers	Pancreas	Pancrea
16	chr10:49459200-49461000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:49459200-49461000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:49459200-49462200	Enhancers	NHEK	skin
19	chr10:49459400-49460800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:49459400-49460800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr10:49459400-49460800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr10:49459400-49460800	Enhancers	Left Ventricle	heart
23	chr10:49459400-49461000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:49459600-49461000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr10:49459800-49463400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:49460400-49462000	Weak transcription	Fetal Kidney	kidney
27	chr10:49460600-49464600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:49460600-49465800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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