Variant report

Variant	rs11102708
Chromosome Location	chr1:114511635-114511636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114507526..114510965-chr1:114511227..114514003,3	MCF-7	breast:
2	chr1:114451330..114452936-chr1:114510324..114512060,2	K562	blood:
3	chr1:114507385..114510097-chr1:114511069..114514581,3	MCF-7	breast:
4	chr1:114510746..114512947-chr1:114513857..114516278,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10108	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10494162	0.92[ASN][1000 genomes]
rs10494163	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11102703	0.88[ASN][1000 genomes]
rs11102706	0.97[ASN][1000 genomes]
rs11102707	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11102709	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12060750	0.85[ASN][1000 genomes]
rs12125546	0.84[ASN][1000 genomes]
rs12127377	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12129050	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217444	0.87[ASN][1000 genomes]
rs1503832	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1553449	0.92[ASN][1000 genomes]
rs1553450	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17852555	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1910485	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1985435	0.91[ASN][1000 genomes]
rs1985436	0.92[ASN][1000 genomes]
rs41302825	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6537800	0.86[ASN][1000 genomes]
rs6669370	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6674384	0.81[ASN][1000 genomes]
rs7364	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7519860	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7545300	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7546851	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs756493	0.84[ASN][1000 genomes]
rs878129	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11102708	DCLRE1B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114479000-114517600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:114490600-114512000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:114492800-114518600	Strong transcription	Dnd41	blood
4	chr1:114493400-114517600	Strong transcription	Fetal Thymus	thymus
5	chr1:114495400-114517400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:114495800-114516800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:114495800-114518200	Strong transcription	Primary B cells from peripheral blood	blood
8	chr1:114496000-114517000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:114496400-114516000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:114496400-114516400	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr1:114496400-114517000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:114496400-114517200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr1:114496400-114517400	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr1:114496400-114517600	Strong transcription	Duodenum Mucosa	Duodenum
15	chr1:114496400-114518200	Strong transcription	K562	blood
16	chr1:114496400-114519400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr1:114496600-114518800	Strong transcription	Primary B cells from cord blood	blood
18	chr1:114497000-114516400	Strong transcription	Fetal Intestine Large	intestine
19	chr1:114497000-114517000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr1:114497200-114516400	Strong transcription	Primary hematopoietic stem cells	blood
21	chr1:114497200-114516400	Strong transcription	GM12878-XiMat	blood
22	chr1:114497600-114517600	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:114497800-114517400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:114498000-114517400	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr1:114498800-114518200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr1:114500000-114517600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr1:114501800-114516800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr1:114503800-114517400	Strong transcription	Placenta	Placenta
29	chr1:114503800-114518600	Strong transcription	Brain Germinal Matrix	brain
30	chr1:114504000-114514800	Strong transcription	Hela-S3	cervix
31	chr1:114504200-114516800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr1:114504400-114517000	Strong transcription	Osteobl	bone
33	chr1:114504600-114517600	Strong transcription	HSMM	muscle
34	chr1:114504600-114517800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
35	chr1:114504600-114519000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:114504800-114512600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr1:114504800-114516200	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr1:114504800-114516200	Strong transcription	NHLF	lung
39	chr1:114504800-114516400	Strong transcription	Fetal Lung	lung
40	chr1:114504800-114516400	Strong transcription	Fetal Muscle Leg	muscle
41	chr1:114504800-114516400	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr1:114504800-114516600	Strong transcription	Fetal Muscle Trunk	muscle
43	chr1:114504800-114517400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
44	chr1:114504800-114517600	Strong transcription	Primary T cells from cord blood	blood
45	chr1:114504800-114517600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr1:114504800-114517600	Strong transcription	NHDF-Ad	bronchial
47	chr1:114504800-114517800	Strong transcription	Liver	Liver
48	chr1:114504800-114518400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr1:114504800-114519400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:114505000-114516400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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