Variant report

Variant	rs11112180
Chromosome Location	chr12:105134065-105134066
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105126812..105130545-chr12:105132208..105136882,4	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10507176	1.00[ASW][hapmap]
rs10861275	0.82[ASN][1000 genomes]
rs11112178	0.90[CHB][hapmap]
rs12426228	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105123400-105136200	Enhancers	Primary T cells fromperipheralblood	blood
2	chr12:105124000-105134400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr12:105125000-105136000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr12:105125200-105137600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr12:105125200-105137800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr12:105126400-105134200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:105126400-105134400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:105126400-105135400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr12:105127000-105137200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr12:105127600-105134400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr12:105128000-105141200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr12:105128200-105135200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr12:105128400-105135000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr12:105128800-105134200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:105129000-105139200	Enhancers	Primary B cells from peripheral blood	blood
16	chr12:105129200-105137400	Enhancers	Fetal Muscle Leg	muscle
17	chr12:105129800-105134200	Weak transcription	Colonic Mucosa	Colon
18	chr12:105129800-105135800	Weak transcription	Colon Smooth Muscle	Colon
19	chr12:105129800-105136000	Weak transcription	Right Ventricle	heart
20	chr12:105130000-105136000	Weak transcription	Gastric	stomach
21	chr12:105130000-105136000	Weak transcription	Pancreas	Pancrea
22	chr12:105130000-105150800	Weak transcription	A549	lung
23	chr12:105130200-105136200	Weak transcription	Fetal Lung	lung
24	chr12:105130200-105150200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr12:105130400-105136200	Weak transcription	Aorta	Aorta
26	chr12:105130600-105134400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr12:105130800-105134400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr12:105131000-105135000	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr12:105131000-105135200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr12:105131000-105135200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr12:105131200-105135000	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr12:105131200-105135200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr12:105131200-105137200	Enhancers	Placenta	Placenta
34	chr12:105131400-105134200	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr12:105131400-105135600	Strong transcription	Dnd41	blood
36	chr12:105131400-105136000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr12:105131400-105136000	Weak transcription	Left Ventricle	heart
38	chr12:105131600-105137400	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr12:105131800-105134200	Weak transcription	Thymus	Thymus
40	chr12:105131800-105134200	Weak transcription	NHDF-Ad	bronchial
41	chr12:105131800-105134600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:105132000-105135600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr12:105132200-105134200	Weak transcription	Primary T cells from cord blood	blood
44	chr12:105132200-105134800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr12:105132200-105135800	Weak transcription	Brain Anterior Caudate	brain
46	chr12:105132200-105141200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr12:105132400-105135400	Weak transcription	Fetal Stomach	stomach
48	chr12:105132400-105136000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr12:105132400-105136000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr12:105132400-105136000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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