Variant report

Variant	rs10861275
Chromosome Location	chr12:105135194-105135195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105124445..105127183-chr12:105135095..105137276,2	K562	blood:
2	chr12:105126812..105130545-chr12:105132208..105136882,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10861274	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11112176	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11112178	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11112180	0.82[ASN][1000 genomes]
rs12230941	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12426228	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60756405	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105123400-105136200	Enhancers	Primary T cells fromperipheralblood	blood
2	chr12:105125000-105136000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr12:105125200-105137600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr12:105125200-105137800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr12:105126400-105135400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr12:105127000-105137200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr12:105128000-105141200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:105128200-105135200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr12:105129000-105139200	Enhancers	Primary B cells from peripheral blood	blood
10	chr12:105129200-105137400	Enhancers	Fetal Muscle Leg	muscle
11	chr12:105129800-105135800	Weak transcription	Colon Smooth Muscle	Colon
12	chr12:105129800-105136000	Weak transcription	Right Ventricle	heart
13	chr12:105130000-105136000	Weak transcription	Gastric	stomach
14	chr12:105130000-105136000	Weak transcription	Pancreas	Pancrea
15	chr12:105130000-105150800	Weak transcription	A549	lung
16	chr12:105130200-105136200	Weak transcription	Fetal Lung	lung
17	chr12:105130200-105150200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr12:105130400-105136200	Weak transcription	Aorta	Aorta
19	chr12:105131000-105135200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr12:105131000-105135200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr12:105131200-105135200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr12:105131200-105137200	Enhancers	Placenta	Placenta
23	chr12:105131400-105135600	Strong transcription	Dnd41	blood
24	chr12:105131400-105136000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:105131400-105136000	Weak transcription	Left Ventricle	heart
26	chr12:105131600-105137400	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr12:105132000-105135600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:105132200-105135800	Weak transcription	Brain Anterior Caudate	brain
29	chr12:105132200-105141200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr12:105132400-105135400	Weak transcription	Fetal Stomach	stomach
31	chr12:105132400-105136000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr12:105132400-105136000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:105132400-105136000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr12:105132400-105136400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr12:105132400-105136400	Weak transcription	Brain Angular Gyrus	brain
36	chr12:105132600-105136200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr12:105132600-105136600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr12:105132600-105141400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr12:105132800-105135600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr12:105132800-105136400	Weak transcription	HSMMtube	muscle
41	chr12:105132800-105141400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr12:105132800-105141400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr12:105133000-105135800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr12:105133000-105136000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr12:105133000-105142200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr12:105133200-105135400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr12:105133200-105136000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr12:105133400-105141800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr12:105133600-105135600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr12:105133600-105135800	Enhancers	Primary hematopoietic stem cells	blood

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