Variant report

Variant	rs12230941
Chromosome Location	chr12:105124360-105124361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:105124334..105127781-chr12:105128206..105132825,4	K562	blood:
2	chr12:105118825..105122696-chr12:105123025..105128000,6	K562	blood:
3	chr12:105114220..105116459-chr12:105123813..105125766,2	K562	blood:
4	chr12:105123345..105125834-chr12:105127329..105130325,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10861274	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10861275	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11112176	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11112178	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12426228	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2559634	0.89[ASN][1000 genomes]
rs2694420	0.89[ASN][1000 genomes]
rs312154	0.83[ASN][1000 genomes]
rs312155	0.91[ASN][1000 genomes]
rs312163	0.82[ASN][1000 genomes]
rs312165	0.91[ASN][1000 genomes]
rs312166	0.90[ASN][1000 genomes]
rs312167	0.90[ASN][1000 genomes]
rs312168	0.90[ASN][1000 genomes]
rs60756405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1050695	chr12:105000981-105125161	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv541589	chr12:105000981-105125161	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105080400-105131800	Weak transcription	NHEK	skin
2	chr12:105114400-105125800	Weak transcription	Fetal Brain Female	brain
3	chr12:105115000-105129800	Weak transcription	Fetal Lung	lung
4	chr12:105115200-105124400	Weak transcription	Spleen	Spleen
5	chr12:105115200-105124800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr12:105115200-105129600	Weak transcription	Placenta	Placenta
7	chr12:105115400-105128800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr12:105115600-105128400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr12:105116000-105125800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr12:105116000-105131600	Weak transcription	Esophagus	oesophagus
11	chr12:105116200-105126400	Weak transcription	Brain Hippocampus Middle	brain
12	chr12:105116600-105128400	Weak transcription	A549	lung
13	chr12:105116800-105125800	Weak transcription	Primary T cells from cord blood	blood
14	chr12:105116800-105126400	Weak transcription	Brain Germinal Matrix	brain
15	chr12:105117000-105125800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr12:105117000-105127000	Strong transcription	Dnd41	blood
17	chr12:105117200-105126400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr12:105117400-105126400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr12:105117400-105127400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr12:105117400-105127600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr12:105117600-105126600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr12:105117600-105126800	Weak transcription	Thymus	Thymus
23	chr12:105117800-105129400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr12:105117800-105129400	Weak transcription	GM12878-XiMat	blood
25	chr12:105118000-105125600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr12:105118400-105131000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr12:105120200-105130000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr12:105121000-105125000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr12:105121200-105125600	Enhancers	Fetal Muscle Leg	muscle
30	chr12:105121400-105125600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr12:105121400-105126600	Weak transcription	Gastric	stomach
32	chr12:105121400-105129800	Weak transcription	Pancreas	Pancrea
33	chr12:105121800-105130800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr12:105122400-105124400	Enhancers	Right Ventricle	heart
35	chr12:105122800-105124400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr12:105122800-105124600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr12:105123000-105124600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr12:105123000-105124800	Strong transcription	Primary hematopoietic stem cells	blood
39	chr12:105123000-105125000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr12:105123000-105125000	Enhancers	Right Atrium	heart
41	chr12:105123000-105127000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr12:105123000-105128600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr12:105123200-105126400	Weak transcription	Fetal Thymus	thymus
44	chr12:105123200-105127800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr12:105123400-105124600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr12:105123400-105124600	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr12:105123400-105124800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr12:105123400-105124800	Enhancers	Fetal Intestine Small	intestine
49	chr12:105123400-105125200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr12:105123400-105125200	Enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links