Variant report
Variant | rs11116813 |
---|---|
Chromosome Location | chr12:85812245-85812246 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10779163 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10779165 | 0.82[EUR][1000 genomes] |
rs10779166 | 0.82[EUR][1000 genomes] |
rs10862989 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10862992 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs10862994 | 0.80[EUR][1000 genomes] |
rs10862995 | 0.82[EUR][1000 genomes] |
rs10862998 | 0.82[EUR][1000 genomes] |
rs11116838 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11116850 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11116851 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs11116853 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs11116857 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs12230791 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs12311475 | 0.82[EUR][1000 genomes] |
rs12318024 | 0.80[EUR][1000 genomes] |
rs1547544 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4761064 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4761080 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6539898 | 0.82[EUR][1000 genomes] |
rs67352195 | 0.81[EUR][1000 genomes] |
rs7397867 | 0.82[EUR][1000 genomes] |
rs7485843 | 0.82[EUR][1000 genomes] |
rs7488757 | 0.82[EUR][1000 genomes] |
rs7488922 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7975674 | 0.82[EUR][1000 genomes] |
rs7976228 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv1792335 | chr12:85321249-86003609 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
2 | nsv817242 | chr12:85622245-86069213 | Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
3 | nsv1054573 | chr12:85658602-86235433 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
4 | nsv1035600 | chr12:85661373-86235433 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:85801000-85819800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |