Variant report

Variant	rs4761064
Chromosome Location	chr12:85857016-85857017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:85846574..85849271-chr12:85855607..85858014,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10779163	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10779165	0.82[EUR][1000 genomes]
rs10779166	0.82[EUR][1000 genomes]
rs10862989	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10862992	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10862994	0.80[EUR][1000 genomes]
rs10862995	0.82[EUR][1000 genomes]
rs10862998	0.82[EUR][1000 genomes]
rs11116813	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11116838	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11116850	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11116851	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11116853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11116857	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12230791	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12311475	0.82[EUR][1000 genomes]
rs12318024	0.80[EUR][1000 genomes]
rs1547544	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4761080	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6539898	0.82[EUR][1000 genomes]
rs67352195	0.81[EUR][1000 genomes]
rs7397867	0.82[EUR][1000 genomes]
rs7485843	0.82[EUR][1000 genomes]
rs7488757	0.82[EUR][1000 genomes]
rs7488922	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7975674	0.82[EUR][1000 genomes]
rs7976228	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792335	chr12:85321249-86003609	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv817242	chr12:85622245-86069213	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1054573	chr12:85658602-86235433	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1035600	chr12:85661373-86235433	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1053044	chr12:85843030-85942504	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1036617	chr12:85855093-86010549	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85851400-85859200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:85855400-85858600	Weak transcription	HMEC	breast
3	chr12:85855400-85858600	Weak transcription	NHEK	skin
4	chr12:85855600-85859800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:85856600-85857400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:85856600-85859600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr12:85856600-85859600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:85856800-85857200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr12:85856800-85857200	Enhancers	Primary T cells from cord blood	blood
10	chr12:85856800-85857200	Enhancers	Primary hematopoietic stem cells	blood

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