Variant report
| Variant | rs11117072 |
|---|---|
| Chromosome Location | chr12:86276347-86276348 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:86276199..86276762-chr6:26271471..26272035,2 | Hela-S3 | cervix: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000256018 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10863088 | 0.84[JPT][hapmap] |
| rs10863100 | 0.89[ASN][1000 genomes] |
| rs10863117 | 0.88[EUR][1000 genomes] |
| rs10863119 | 0.88[EUR][1000 genomes] |
| rs11117094 | 0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11117109 | 0.88[EUR][1000 genomes] |
| rs11117117 | 0.88[EUR][1000 genomes] |
| rs11117123 | 0.82[ASN][1000 genomes] |
| rs11117125 | 0.88[EUR][1000 genomes] |
| rs11117128 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes] |
| rs11117131 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap] |
| rs11503287 | 0.82[ASN][1000 genomes] |
| rs11829570 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12099914 | 0.88[EUR][1000 genomes] |
| rs12231117 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12231763 | 0.83[AMR][1000 genomes] |
| rs1584367 | 0.82[ASN][1000 genomes] |
| rs2044618 | 0.88[EUR][1000 genomes] |
| rs2405627 | 0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs55811543 | 0.82[ASN][1000 genomes] |
| rs7133797 | 0.80[ASN][1000 genomes] |
| rs7134573 | 0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7134915 | 0.88[EUR][1000 genomes] |
| rs7137122 | 0.82[ASN][1000 genomes] |
| rs7305873 | 0.82[ASN][1000 genomes] |
| rs7305891 | 0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7958677 | 0.82[ASN][1000 genomes] |
| rs7960313 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1052187 | chr12:85954455-86278200 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv541560 | chr12:85954455-86278200 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1049179 | chr12:86056376-86799188 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | esv1797806 | chr12:86198935-86425608 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
