Variant report

Variant	rs55811543
Chromosome Location	chr12:86290936-86290937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10047659	0.89[ASN][1000 genomes]
rs10083080	0.89[ASN][1000 genomes]
rs10746355	0.90[ASN][1000 genomes]
rs10746356	0.90[ASN][1000 genomes]
rs10746357	0.90[ASN][1000 genomes]
rs10779218	0.90[ASN][1000 genomes]
rs10779219	0.90[ASN][1000 genomes]
rs10779222	0.90[ASN][1000 genomes]
rs10863093	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10863100	0.87[ASN][1000 genomes]
rs10863115	0.90[ASN][1000 genomes]
rs10863118	0.90[ASN][1000 genomes]
rs10863120	0.90[ASN][1000 genomes]
rs10863123	0.90[ASN][1000 genomes]
rs11117072	0.82[ASN][1000 genomes]
rs11117094	0.86[ASN][1000 genomes]
rs11117102	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11117108	0.90[ASN][1000 genomes]
rs11117116	0.90[ASN][1000 genomes]
rs11117119	0.83[ASN][1000 genomes]
rs11117120	0.90[ASN][1000 genomes]
rs11503287	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11829570	0.86[ASN][1000 genomes]
rs11834294	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11836175	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12231117	0.86[ASN][1000 genomes]
rs1374995	0.87[ASN][1000 genomes]
rs1448094	0.90[ASN][1000 genomes]
rs2044617	0.90[ASN][1000 genomes]
rs2121892	0.89[ASN][1000 genomes]
rs2405627	0.86[ASN][1000 genomes]
rs2405789	0.90[ASN][1000 genomes]
rs28509446	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4919775	0.90[ASN][1000 genomes]
rs61929387	0.89[ASN][1000 genomes]
rs6539934	0.90[ASN][1000 genomes]
rs7133797	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7134573	0.87[ASN][1000 genomes]
rs7137122	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7301496	0.90[ASN][1000 genomes]
rs7305284	0.90[ASN][1000 genomes]
rs7305873	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7305891	0.88[ASN][1000 genomes]
rs7313443	0.90[ASN][1000 genomes]
rs7958677	1.00[ASN][1000 genomes]
rs7972238	0.90[ASN][1000 genomes]
rs7974794	0.90[ASN][1000 genomes]
rs7978132	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86290600-86293200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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