Variant report

Variant	rs28509446
Chromosome Location	chr12:86312584-86312585
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10047659	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10083080	0.91[ASN][1000 genomes]
rs10746355	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10746356	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10746357	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10779218	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10779219	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10779222	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10863093	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10863100	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10863115	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10863118	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10863120	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10863123	0.92[ASN][1000 genomes]
rs11117094	0.88[ASN][1000 genomes]
rs11117102	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117108	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11117116	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11117119	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11117120	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11117123	0.81[ASN][1000 genomes]
rs11503287	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11829570	0.88[ASN][1000 genomes]
rs11834294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11836175	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12231117	0.88[ASN][1000 genomes]
rs1374995	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1448094	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1584367	0.81[ASN][1000 genomes]
rs2044617	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2121892	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2405627	0.88[ASN][1000 genomes]
rs2405789	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4919775	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs55811543	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61929387	0.91[ASN][1000 genomes]
rs6539934	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7133797	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7134573	0.87[ASN][1000 genomes]
rs7137122	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7301496	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7305284	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7305873	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7305891	0.86[ASN][1000 genomes]
rs7313443	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7958677	0.98[ASN][1000 genomes]
rs7972238	0.92[ASN][1000 genomes]
rs7974794	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7978132	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86311200-86313800	Weak transcription	Pancreas	Pancrea

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