Variant report

Variant	rs61929387
Chromosome Location	chr12:86319262-86319263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10047659	0.98[ASN][1000 genomes]
rs10083080	0.98[ASN][1000 genomes]
rs10746355	0.99[ASN][1000 genomes]
rs10746356	0.99[ASN][1000 genomes]
rs10746357	0.99[ASN][1000 genomes]
rs10779218	0.99[ASN][1000 genomes]
rs10779219	0.99[ASN][1000 genomes]
rs10779222	0.99[ASN][1000 genomes]
rs10863100	0.81[ASN][1000 genomes]
rs10863115	0.99[ASN][1000 genomes]
rs10863117	0.87[ASN][1000 genomes]
rs10863118	0.99[ASN][1000 genomes]
rs10863119	0.87[ASN][1000 genomes]
rs10863120	0.99[ASN][1000 genomes]
rs10863123	0.99[ASN][1000 genomes]
rs11117094	0.82[ASN][1000 genomes]
rs11117102	0.91[ASN][1000 genomes]
rs11117108	0.99[ASN][1000 genomes]
rs11117109	0.87[ASN][1000 genomes]
rs11117116	0.99[ASN][1000 genomes]
rs11117117	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11117119	0.91[ASN][1000 genomes]
rs11117120	0.99[ASN][1000 genomes]
rs11117121	0.85[ASN][1000 genomes]
rs11117123	0.90[ASN][1000 genomes]
rs11117125	0.86[ASN][1000 genomes]
rs11117128	0.85[ASN][1000 genomes]
rs11503287	0.89[ASN][1000 genomes]
rs11829570	0.82[ASN][1000 genomes]
rs11834294	0.91[ASN][1000 genomes]
rs11836175	0.91[ASN][1000 genomes]
rs12099914	0.87[ASN][1000 genomes]
rs12231117	0.82[ASN][1000 genomes]
rs12231763	0.87[ASN][1000 genomes]
rs1374995	0.95[ASN][1000 genomes]
rs1448093	0.86[ASN][1000 genomes]
rs1448094	0.99[ASN][1000 genomes]
rs1584367	0.90[ASN][1000 genomes]
rs2044617	0.99[ASN][1000 genomes]
rs2044618	0.87[ASN][1000 genomes]
rs2044619	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2121892	0.98[ASN][1000 genomes]
rs2405627	0.82[ASN][1000 genomes]
rs2405789	0.99[ASN][1000 genomes]
rs28509446	0.91[ASN][1000 genomes]
rs4919775	0.99[ASN][1000 genomes]
rs55811543	0.89[ASN][1000 genomes]
rs6539934	0.99[ASN][1000 genomes]
rs7133797	0.90[ASN][1000 genomes]
rs7134573	0.81[ASN][1000 genomes]
rs7134915	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7137122	0.89[ASN][1000 genomes]
rs7301496	0.99[ASN][1000 genomes]
rs7305284	0.99[ASN][1000 genomes]
rs7305873	0.89[ASN][1000 genomes]
rs7313443	0.99[ASN][1000 genomes]
rs73382010	0.86[ASN][1000 genomes]
rs7958677	0.89[ASN][1000 genomes]
rs7960313	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7972238	0.99[ASN][1000 genomes]
rs7974794	0.99[ASN][1000 genomes]
rs7978132	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86318600-86324600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr12:86318800-86319400	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links