Variant report

Variant	rs1111877
Chromosome Location	chr6:73830950-73830951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1342343	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418411	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1578674	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883374	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16883411	0.96[EUR][1000 genomes]
rs1891404	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935533	0.84[ASN][1000 genomes]
rs1935534	0.84[ASN][1000 genomes]
rs1935535	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1935536	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935542	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935543	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000205	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051020	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051021	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051022	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051023	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051025	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066368	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2350390	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2350749	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2350750	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796042	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2796043	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2796045	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2796046	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2796047	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2796049	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2796050	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2796051	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2797087	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2797088	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2797089	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2797090	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2797091	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4084853	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142649	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4379253	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635988	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706527	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706529	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706531	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706532	1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4708027	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4708029	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4708030	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4708031	0.96[EUR][1000 genomes]
rs4708032	0.87[ASN][1000 genomes]
rs4708034	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4708035	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453634	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453635	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453636	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453641	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453642	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6453643	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6907117	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6925506	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933648	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743780	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743974	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762723	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763151	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776143	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293919	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293921	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9341407	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9343005	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359016	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359017	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360638	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360641	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947611	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs947613	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73814800-73831200	Weak transcription	HSMM	muscle
2	chr6:73815200-73839400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:73816600-73831000	Weak transcription	HSMMtube	muscle
4	chr6:73818000-73846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:73821000-73849800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:73821400-73839600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:73821600-73831200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:73821800-73839400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:73822000-73839400	Weak transcription	Fetal Heart	heart
10	chr6:73822200-73831000	Weak transcription	GM12878-XiMat	blood
11	chr6:73829800-73831400	Weak transcription	Dnd41	blood
12	chr6:73830000-73832400	Strong transcription	Primary B cells from cord blood	blood
13	chr6:73830200-73831000	Strong transcription	Primary B cells from peripheral blood	blood
14	chr6:73830200-73831200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:73830200-73831600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:73830200-73831800	Strong transcription	Primary hematopoietic stem cells	blood
17	chr6:73830200-73831800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:73830200-73834400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:73830600-73831200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:73830600-73831600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:73830600-73831600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:73830600-73831600	Enhancers	HMEC	breast
23	chr6:73830600-73832400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:73830800-73839600	Weak transcription	Primary T cells fromperipheralblood	blood

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