Variant report

Variant	rs1935535
Chromosome Location	chr6:73807085-73807086
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1111877	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1342343	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418411	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1578674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16883374	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16883411	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1891404	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1935530	0.85[AFR][1000 genomes]
rs1935533	0.81[ASN][1000 genomes]
rs1935534	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1935536	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1935542	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1935543	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2000205	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051020	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051022	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051023	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2066368	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2350390	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2350749	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2350750	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2796042	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2796043	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2796045	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2796046	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2796047	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2796049	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2796050	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2796051	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2797087	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2797088	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2797089	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2797090	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2797091	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4084853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4142649	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4379253	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4635988	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4706527	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4706529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4706530	0.92[AFR][1000 genomes]
rs4706531	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4706532	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4708027	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4708029	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4708030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4708031	0.96[EUR][1000 genomes]
rs4708032	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4708034	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4708035	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6453634	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6453635	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6453636	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6453641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6453642	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6453643	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6907117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6925506	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6933648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7743780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7743974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7762723	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7763151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7776143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9293919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9293921	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9341407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9343005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9343007	0.96[AFR][1000 genomes]
rs9359016	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9359017	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9360638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9360641	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs947611	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs947613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73791000-73830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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