Variant report

Variant	rs1935530
Chromosome Location	chr6:73831348-73831349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73121651..73122494-chr6:73831050..73831873,3	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11963032	0.82[EUR][1000 genomes]
rs1342343	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1578674	0.85[AFR][1000 genomes]
rs16883411	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1891404	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1935535	0.85[AFR][1000 genomes]
rs1935536	0.85[AFR][1000 genomes]
rs1935542	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1935543	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2051020	0.90[YRI][hapmap]
rs2051021	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2051025	0.85[AFR][1000 genomes]
rs2350750	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2796044	0.81[EUR][1000 genomes]
rs2796047	1.00[TSI][hapmap]
rs2796050	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs2796051	1.00[TSI][hapmap]
rs2796052	0.90[YRI][hapmap]
rs2797089	1.00[TSI][hapmap]
rs2797090	0.80[YRI][hapmap]
rs4084853	1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4142649	0.92[TSI][hapmap]
rs4235873	0.83[EUR][1000 genomes]
rs4379253	1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4635988	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4706527	0.85[LWK][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap]
rs4706529	0.85[AFR][1000 genomes]
rs4706530	0.85[AFR][1000 genomes]
rs4706532	0.89[AFR][1000 genomes]
rs4708027	0.85[LWK][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap]
rs4708030	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4708033	0.83[EUR][1000 genomes]
rs4708034	0.82[AFR][1000 genomes]
rs4708035	0.89[AFR][1000 genomes]
rs6453636	1.00[TSI][hapmap]
rs6453641	0.89[AFR][1000 genomes]
rs6453642	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6453643	0.82[YRI][hapmap]
rs6907117	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6911751	1.00[CEU][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs6925506	0.82[AFR][1000 genomes]
rs6933440	0.85[TSI][hapmap]
rs6933648	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7743780	0.85[AFR][1000 genomes]
rs7743974	0.85[AFR][1000 genomes]
rs7760644	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7763151	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7772526	0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs7776143	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9293919	1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9293920	0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs9293921	0.89[AFR][1000 genomes]
rs9341407	0.85[AFR][1000 genomes]
rs9343005	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9343007	0.82[AFR][1000 genomes]
rs9343009	0.83[EUR][1000 genomes]
rs9359016	0.89[AFR][1000 genomes]
rs9359017	1.00[LWK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs9360638	0.85[AFR][1000 genomes]
rs9360640	0.85[EUR][1000 genomes]
rs9446844	0.83[EUR][1000 genomes]
rs9446845	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs947611	1.00[TSI][hapmap]
rs947613	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73815200-73839400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:73818000-73846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:73821000-73849800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:73821400-73839600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:73821800-73839400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:73822000-73839400	Weak transcription	Fetal Heart	heart
7	chr6:73829800-73831400	Weak transcription	Dnd41	blood
8	chr6:73830000-73832400	Strong transcription	Primary B cells from cord blood	blood
9	chr6:73830200-73831600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:73830200-73831800	Strong transcription	Primary hematopoietic stem cells	blood
11	chr6:73830200-73831800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:73830200-73834400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:73830600-73831600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:73830600-73831600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:73830600-73831600	Enhancers	HMEC	breast
16	chr6:73830600-73832400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:73830800-73839600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:73831000-73831400	Enhancers	HSMMtube	muscle
19	chr6:73831000-73831600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:73831000-73831600	Strong transcription	GM12878-XiMat	blood
21	chr6:73831000-73839600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr6:73831200-73831600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:73831200-73831600	Enhancers	NHEK	skin
24	chr6:73831200-73832000	Enhancers	HSMM	muscle
25	chr6:73831200-73833400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:73831200-73834000	Strong transcription	Primary T cells from cord blood	blood
27	chr6:73831200-73841600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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