Variant report

Variant	rs7760644
Chromosome Location	chr6:73851837-73851838
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-257K9.7.1-1	chr6:73851612-73851839	NONHSAT113532
2	lnc-RP11-257K9.7.1-1	chr6:73851612-73851839	NONHSAT113534

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1113015	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11963032	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16883384	0.86[JPT][hapmap];0.84[AMR][1000 genomes]
rs1935530	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2796044	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2796052	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4235873	1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4706528	0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4708033	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6911409	1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6927134	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6933361	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6933440	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7748968	0.84[JPT][hapmap]
rs7764571	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7772526	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7776435	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9293920	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9341404	1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9341408	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9341409	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9343006	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9343009	0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9350488	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9350489	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9360636	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9360640	0.89[CHB][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9442887	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9442891	0.85[JPT][hapmap];0.84[AMR][1000 genomes]
rs9442892	0.84[AMR][1000 genomes]
rs9442893	0.86[JPT][hapmap];0.84[AMR][1000 genomes]
rs9446844	1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9446845	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9446846	0.84[JPT][hapmap];0.84[AMR][1000 genomes]
rs9446848	0.84[JPT][hapmap];0.84[AMR][1000 genomes]
rs9446851	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv519218	chr6:73845299-73862856	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73839200-73854400	Weak transcription	Aorta	Aorta
2	chr6:73839800-73852400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:73842000-73855600	Weak transcription	HSMM	muscle
4	chr6:73844400-73867000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:73844600-73865200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:73844800-73866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:73846000-73866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:73846400-73879200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:73850800-73853000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:73851600-73852800	Strong transcription	Primary B cells from cord blood	blood

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