Variant report

Variant	rs16883384
Chromosome Location	chr6:73850179-73850180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73843144..73846090-chr6:73848309..73850546,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1113015	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1113016	0.87[ASN][1000 genomes]
rs11962533	0.89[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs11965567	0.87[ASN][1000 genomes]
rs11968396	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1418414	0.85[ASN][1000 genomes]
rs1573057	0.89[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs2051024	0.81[AMR][1000 genomes]
rs2796044	0.84[AMR][1000 genomes]
rs4235873	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs6453633	1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs6904597	0.87[ASN][1000 genomes]
rs6906616	0.87[ASN][1000 genomes]
rs6906825	0.88[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs6907569	0.89[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs6911409	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs6911751	0.92[JPT][hapmap];0.84[AMR][1000 genomes]
rs6912022	0.88[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs6927120	0.87[ASN][1000 genomes]
rs6930212	0.87[ASN][1000 genomes]
rs6933440	0.86[JPT][hapmap]
rs73452858	0.87[ASN][1000 genomes]
rs73452859	0.87[ASN][1000 genomes]
rs73452861	0.87[ASN][1000 genomes]
rs7739692	1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7743399	0.87[ASN][1000 genomes]
rs7744386	0.89[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs7744394	0.89[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs7748968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7760644	0.86[JPT][hapmap];0.84[AMR][1000 genomes]
rs7772526	0.86[JPT][hapmap]
rs9341404	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs9442891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9442892	0.87[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9442893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9442895	0.88[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs9446844	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs9446846	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446848	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446850	0.83[AFR][1000 genomes]
rs9446856	0.88[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv519218	chr6:73845299-73862856	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73839200-73854400	Weak transcription	Aorta	Aorta
2	chr6:73839800-73852400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:73842000-73855600	Weak transcription	HSMM	muscle
4	chr6:73844400-73867000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:73844600-73865200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:73844800-73866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:73846000-73866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:73846400-73879200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:73847800-73850600	Strong transcription	Primary B cells from cord blood	blood
10	chr6:73849800-73850800	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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