Variant report

Variant	rs11968396
Chromosome Location	chr6:73816478-73816479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73815263..73817266-chr6:73822401..73824311,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1113016	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11962533	0.88[CHB][hapmap]
rs11965567	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418414	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573057	0.88[CHB][hapmap]
rs16883380	0.84[MEX][hapmap]
rs16883384	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2051024	0.84[MEX][hapmap]
rs6453633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6904597	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6906825	0.88[CHB][hapmap];0.87[CHD][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap]
rs6907569	0.88[CHB][hapmap]
rs6911751	0.85[JPT][hapmap];0.84[MEX][hapmap]
rs6912022	0.88[CHB][hapmap];0.87[CHD][hapmap];1.00[TSI][hapmap]
rs6927120	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6927134	1.00[CEU][hapmap]
rs73452858	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73452859	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73452861	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7739692	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7743399	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7744386	0.88[CHB][hapmap]
rs7744394	0.88[CHB][hapmap]
rs7748968	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.89[MEX][hapmap];0.87[ASN][1000 genomes]
rs7764373	0.84[MEX][hapmap];1.00[TSI][hapmap]
rs7773573	1.00[TSI][hapmap]
rs9341408	1.00[CEU][hapmap]
rs9442891	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9442892	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9442893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9442895	0.88[CHB][hapmap];0.87[CHD][hapmap]
rs9446846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.89[MEX][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9446848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.89[MEX][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9446856	0.88[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73791000-73830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73813000-73830200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:73813800-73821000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:73814200-73821000	Weak transcription	Primary T cells from cord blood	blood
5	chr6:73814600-73830200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:73814800-73831200	Weak transcription	HSMM	muscle
7	chr6:73815200-73839400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:73815800-73817200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:73815800-73818000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:73816000-73817800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:73816200-73822400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:73816400-73816600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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