Variant report

Variant	rs7743399
Chromosome Location	chr6:73808530-73808531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1113015	0.89[AMR][1000 genomes]
rs1113016	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962533	0.88[AMR][1000 genomes]
rs11965567	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968396	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418414	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1573057	0.90[AMR][1000 genomes]
rs16883384	0.87[ASN][1000 genomes]
rs4235873	0.88[AMR][1000 genomes]
rs4706528	0.89[AMR][1000 genomes]
rs4708028	0.81[AMR][1000 genomes]
rs4708033	0.87[AMR][1000 genomes]
rs6453633	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904597	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906616	0.88[AMR][1000 genomes]
rs6906825	0.88[AMR][1000 genomes]
rs6907569	0.88[AMR][1000 genomes]
rs6911409	0.84[AMR][1000 genomes]
rs6912022	0.88[AMR][1000 genomes]
rs6927120	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927134	0.89[AMR][1000 genomes]
rs6930212	0.90[AMR][1000 genomes]
rs6933361	0.89[AMR][1000 genomes]
rs73452858	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73452859	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73452861	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739692	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7744386	0.88[AMR][1000 genomes]
rs7744394	0.88[AMR][1000 genomes]
rs7748968	0.85[ASN][1000 genomes]
rs7772526	0.81[AMR][1000 genomes]
rs7776435	0.89[AMR][1000 genomes]
rs9293920	0.88[AMR][1000 genomes]
rs9341404	0.89[AMR][1000 genomes]
rs9341408	0.89[AMR][1000 genomes]
rs9341409	0.89[AMR][1000 genomes]
rs9343006	0.88[AMR][1000 genomes]
rs9343009	0.84[AMR][1000 genomes]
rs9350488	0.89[AMR][1000 genomes]
rs9350489	0.89[AMR][1000 genomes]
rs9360636	0.88[AMR][1000 genomes]
rs9360640	0.81[AMR][1000 genomes]
rs9442887	0.89[AMR][1000 genomes]
rs9442891	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9442892	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9442893	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9442895	0.88[AMR][1000 genomes]
rs9446844	0.86[AMR][1000 genomes]
rs9446845	0.81[AMR][1000 genomes]
rs9446846	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9446848	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9446856	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73791000-73830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73807600-73815800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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