Variant report

Variant	rs4235873
Chromosome Location	chr6:73819915-73819916
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1113015	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1113016	0.88[AMR][1000 genomes]
rs11962533	0.81[JPT][hapmap]
rs11963032	0.87[EUR][1000 genomes]
rs11965567	0.88[AMR][1000 genomes]
rs1418414	0.88[AMR][1000 genomes]
rs1573057	0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs16883384	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs1935530	0.83[EUR][1000 genomes]
rs2796044	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4706528	0.83[CHB][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4708028	0.92[AMR][1000 genomes]
rs4708033	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453633	0.86[JPT][hapmap];0.85[AMR][1000 genomes]
rs6904597	0.88[AMR][1000 genomes]
rs6907569	0.81[JPT][hapmap]
rs6911409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6911751	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6927120	0.88[AMR][1000 genomes]
rs6927134	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6927759	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6927779	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6930212	0.81[AMR][1000 genomes]
rs6933361	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6933440	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap]
rs73452858	0.85[AMR][1000 genomes]
rs73452859	0.88[AMR][1000 genomes]
rs73452861	0.88[AMR][1000 genomes]
rs7739692	0.81[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes]
rs7743399	0.88[AMR][1000 genomes]
rs7744386	0.81[JPT][hapmap]
rs7744394	0.81[JPT][hapmap]
rs7760644	1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7764571	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7772526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7776435	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9293920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9341404	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9341408	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9341409	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9343006	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9343009	0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9350488	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9350489	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9360636	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9360640	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9442887	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9442891	0.86[JPT][hapmap]
rs9442893	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs9446844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9446845	0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9446851	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73791000-73830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73813000-73830200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:73813800-73821000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:73814200-73821000	Weak transcription	Primary T cells from cord blood	blood
5	chr6:73814600-73830200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:73814800-73831200	Weak transcription	HSMM	muscle
7	chr6:73815200-73839400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:73816200-73822400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:73816600-73831000	Weak transcription	HSMMtube	muscle
10	chr6:73817200-73822200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:73818000-73821000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:73818000-73846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:73818800-73820800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:73819800-73821200	Enhancers	Fetal Heart	heart
15	chr6:73819800-73830200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:73819800-73830600	Weak transcription	HMEC	breast

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