Variant report

Variant	rs73452858
Chromosome Location	chr6:73809707-73809708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1113015	0.86[AMR][1000 genomes]
rs1113016	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962533	0.85[AMR][1000 genomes]
rs11965567	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968396	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418414	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1573057	0.87[AMR][1000 genomes]
rs16883384	0.87[ASN][1000 genomes]
rs4235873	0.85[AMR][1000 genomes]
rs4706528	0.86[AMR][1000 genomes]
rs4708033	0.84[AMR][1000 genomes]
rs6453633	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904597	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906616	0.85[AMR][1000 genomes]
rs6906825	0.85[AMR][1000 genomes]
rs6907569	0.85[AMR][1000 genomes]
rs6911409	0.81[AMR][1000 genomes]
rs6912022	0.85[AMR][1000 genomes]
rs6927120	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927134	0.86[AMR][1000 genomes]
rs6930212	0.87[AMR][1000 genomes]
rs6933361	0.86[AMR][1000 genomes]
rs73452859	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73452861	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739692	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7743399	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744386	0.85[AMR][1000 genomes]
rs7744394	0.85[AMR][1000 genomes]
rs7748968	0.85[ASN][1000 genomes]
rs7776435	0.86[AMR][1000 genomes]
rs9293920	0.85[AMR][1000 genomes]
rs9341404	0.86[AMR][1000 genomes]
rs9341408	0.86[AMR][1000 genomes]
rs9341409	0.86[AMR][1000 genomes]
rs9343006	0.85[AMR][1000 genomes]
rs9343009	0.81[AMR][1000 genomes]
rs9350488	0.86[AMR][1000 genomes]
rs9350489	0.86[AMR][1000 genomes]
rs9360636	0.85[AMR][1000 genomes]
rs9442887	0.86[AMR][1000 genomes]
rs9442891	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9442892	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9442893	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9442895	0.85[AMR][1000 genomes]
rs9446844	0.83[AMR][1000 genomes]
rs9446846	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9446848	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9446856	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73791000-73830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73807600-73815800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73808800-73810000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:73809000-73814400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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